1887

Abstract

We analysed the complete coding sequences of all recognized species of -borne flavivirus, including previously uncharacterized viruses within the yellow fever virus (YFV), Spondweni virus (SPOV) and dengue virus (DENV) groups. Two major phylogenetic lineages were revealed: one included the YFV and Entebbe bat virus groups, and the other included the DENV, SPOV and -borne flavivirus groups. This analysis supported previous evidence that -borne flaviviruses have evolved from ancestral -borne viruses. However, the topology at the junction between these lineages remains complex and may be refined by the discovery of viruses related to the Kedougou virus. Additionally, viral evolution was found to be associated with the appearance of new biological characteristics; mutations that may modify the envelope protein structure were identified for seven viruses within the YFV group, and an expansion of host–vector range was identified in the two major evolutionary lineages, which in turn may facilitate the emergence of mosquito-borne flaviviruses.

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2010-01-01
2024-03-28
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References

  1. Ba, Y., Trouillet, J., Thonnon, J. & Fontenille, D.(1999). Phlebotomus of Senegal: survey of the fauna in the region of Kedougou. Isolation of arbovirus. Bull Soc Pathol Exot 92, 131–135. [Google Scholar]
  2. Billoir, F., de Chesse, R., Tolou, H., de Micco, P., Gould, E. A. & de Lamballerie, X.(2000). Phylogeny of the genus Flavivirus using complete coding sequences of arthropod-borne viruses and viruses with no known vector. J Gen Virol 81, 781–790. [Google Scholar]
  3. Burke, D. S. & Monath, T. P.(2001). Flaviviruses. In Fields Virology, pp. 1043–1125. Edited by S. E. Straus. Philadelphia: Lippincott Williams & Wilkins.
  4. Cook, S. & Holmes, E. C.(2006). A multigene analysis of the phylogenetic relationships among the flaviviruses (Family: Flaviviridae) and the evolution of vector transmission. Arch Virol 151, 309–325.[CrossRef] [Google Scholar]
  5. Crochu, S., Cook, S., Attoui, H., Charrel, R. N., De Chesse, R., Belhouchet, M., Lemasson, J. J., de Micco, P. & de Lamballerie, X.(2004). Sequences of flavivirus-related RNA viruses persist in DNA form integrated in the genome of Aedes spp. mosquitoes. J Gen Virol 85, 1971–1980.[CrossRef] [Google Scholar]
  6. CRORA(2005a).http://www.pasteur.fr/recherche/banques/CRORA/virus/v010180.htm [accessed 21 April 2009].
  7. CRORA(2005b).http://www.pasteur.fr/recherche/banques/CRORA/virus/v010190.htm [accessed 21 April 2009].
  8. CRORA(2005c).http://www.pasteur.fr/recherche/banques/CRORA/virus/v010210.htm [accessed 21 April 2009].
  9. Emonet, S. F., Grard, G., Brisbarre, N. M., Moureau, G. N., Temmam, S., Charrel, R. N. & de Lamballerie, X.(2007). Long PCR Product Sequencing (LoPPS): a shotgun-based approach to sequence long PCR products. Nat Protoc 2, 340–346.[CrossRef] [Google Scholar]
  10. Fontenille, D., Traore-Lamizana, M., Trouillet, J., Leclerc, A., Mondo, M., Ba, Y., Digoutte, J. P. & Zeller, H. G.(1994). First isolations of arboviruses from phlebotomine sand flies in West Africa. Am J Trop Med Hyg 50, 570–574. [Google Scholar]
  11. Gaunt, M. W. & Gould, E. A.(2005). Rapid subgroup identification of the flaviviruses using degenerate primer E-gene RT-PCR and site specific restriction enzyme analysis. J Virol Methods 128, 113–127.[CrossRef] [Google Scholar]
  12. Gaunt, M. W., Sall, A. A., de Lamballerie, X., Falconar, A. K., Dzhivanian, T. I. & Gould, E. A.(2001). Phylogenetic relationships of flaviviruses correlate with their epidemiology, disease association and biogeography. J Gen Virol 82, 1867–1876. [Google Scholar]
  13. Gould, E. A., de Lamballerie, X., Zanotto, P. M. & Holmes, E. C.(2001). Evolution, epidemiology, and dispersal of flaviviruses revealed by molecular phylogenies. Adv Virus Res 57, 71–103. [Google Scholar]
  14. Gould, E. A., de Lamballerie, X., Zanotto, P. M. & Holmes, E. C.(2003). Origins, evolution, and vector/host coadaptations within the genus Flavivirus. Adv Virus Res 59, 277–314. [Google Scholar]
  15. Grard, G., Moureau, G., Charrel, R. N., Lemasson, J. J., Gonzalez, J. P., Gallian, P., Gritsun, T. S., Holmes, E. C., Gould, E. A. & de Lamballerie, X.(2007). Genetic characterization of tick-borne flaviviruses: new insights into evolution, pathogenetic determinants and taxonomy. Virology 361, 80–92.[CrossRef] [Google Scholar]
  16. Gritsun, T. S. & Gould, E. A.(2006). The 3′ untranslated region of tick-borne flaviviruses originated by the duplication of long repeat sequences within the open reading frame. Virology 350, 269–275.[CrossRef] [Google Scholar]
  17. Hoshino, K., Isawa, H., Tsuda, Y., Yano, K., Sasaki, T., Yuda, M., Takasaki, T., Kobayashi, M. & Sawabe, K.(2007). Genetic characterization of a new insect flavivirus isolated from Culex pipiens mosquito in Japan. Virology 359, 405–414.[CrossRef] [Google Scholar]
  18. Karabatsos, N.(1985).International Catalogue of Arboviruses, 3rd edn. Edited by N. Karabatsos. San Antonio, Texas: The American Society of Tropical Medicine and Hygiene.
  19. Kuno, G. & Chang, G. J.(2005). Biological transmission of arboviruses: reexamination of and new insights into components, mechanisms, and unique traits as well as their evolutionary trends. Clin Microbiol Rev 18, 608–637.[CrossRef] [Google Scholar]
  20. Kuno, G. & Chang, G. J.(2006). Characterization of Sepik and Entebbe bat viruses closely related to yellow fever virus. Am J Trop Med Hyg 75, 1165–1170. [Google Scholar]
  21. Kuno, G. & Chang, G. J.(2007). Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses. Arch Virol 152, 687–696.[CrossRef] [Google Scholar]
  22. Kuno, G., Chang, G. J., Tsuchiya, K. R., Karabatsos, N. & Cropp, C. B.(1998). Phylogeny of the genus Flavivirus. J Virol 72, 73–83. [Google Scholar]
  23. Lanciotti, R. S., Kosoy, O. L., Laven, J. J., Velez, J. O., Lambert, A. J., Johnson, A. J., Stanfield, S. M. & Duffy, M. R.(2008). Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007. Emerg Infect Dis 14, 1232–1239.[CrossRef] [Google Scholar]
  24. Lassmann, T. & Sonnhammer, E. L.(2005). Kalign – an accurate and fast multiple sequence alignment algorithm. BMC Bioinformatics 6, 298[CrossRef] [Google Scholar]
  25. McIntosh, B. M.(1984a). Banzi virus. In International Catalogue of Arboviruses, 3rd edn, pp. 211–212. Edited by N. Karabatsos. San Antonio, Texas: The American Society of Tropical Medicine and Hygiene.
  26. McIntosh, B. M.(1984b). Spondweni virus. In International Catalogue of Arboviruses, 3rd edn, pp. 961–962. Edited by N. Karabatsos. San Antonio, Texas: The American Society of Tropical Medicine and Hygiene.
  27. Medeiros, D. B., Nunes, M. R., Vasconcelos, P. F., Chang, G. J. & Kuno, G.(2007). Complete genome characterization of Rocio virus (Flavivirus: Flaviviridae), a Brazilian flavivirus isolated from a fatal case of encephalitis during an epidemic in Sao Paulo state. J Gen Virol 88, 2237–2246.[CrossRef] [Google Scholar]
  28. Moureau, G., Temmam, S., Gonzalez, J. P., Charrel, R. N., Grard, G. & de Lamballerie, X.(2007). A real-time RT-PCR method for the universal detection and identification of flaviviruses. Vector Borne Zoonotic Dis 7, 467–477.[CrossRef] [Google Scholar]
  29. Porterfield, J. S.(1980). Antigenic characteristics and classification of Togaviridae. In The Togaviruses: Biology, Structure, Replication, pp. 13–46. Edited by R. W. Schlesinger. New York: Academic Press.
  30. ProMED-mail(2007). Zika virus – Micronesia: Yap (03). ProMED-mail 2007; 06 Jul: 20070706.2157.[accessed 23 Apr 2008].
  31. Strimmer, K. & von Haeseler, A.(1996). Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol Biol Evol 13, 964–969.[CrossRef] [Google Scholar]
  32. Tajima, S., Takasaki, T., Matsuno, S., Nakayama, M. & Kurane, I.(2005). Genetic characterization of Yokose virus, a flavivirus isolated from the bat in Japan. Virology 332, 38–44.[CrossRef] [Google Scholar]
  33. Thiel, H.-J., Collett, M. S., Gould, E. A., Heinz, F. X., Meyers, G., Purcell, R. H., Rice, C. M. & Houghton, M.(2005).Flaviviridae. In Virus Taxonomy – Eighth Report of the International Committee on Taxonomy of Viruses, pp. 981–998. Edited by L. A. Ball. San Diego: Academic Press.
  34. Traore-Lamizana, M., Fontenille, D., Diallo, M., Ba, Y., Zeller, H. G., Mondo, M., Adam, F., Thonon, J. & Maiga, A.(2001). Arbovirus surveillance from 1990 to 1995 in the Barkedji area (Ferlo) of Senegal, a possible natural focus of Rift Valley fever virus. J Med Entomol 38, 480–492.[CrossRef] [Google Scholar]
  35. Wolfe, M. S., Calisher, C. H. & McGuire, K.(1982). Spondweni virus infection in a foreign resident of Upper Volta. Lancet 2, 1306–1308. [Google Scholar]
  36. Wolfe, N. D., Kilbourn, A. M., Karesh, W. B., Rahman, H. A., Bosi, E. J., Cropp, B. C., Andau, M., Spielman, A. & Gubler, D. J.(2001). Sylvatic transmission of arboviruses among Bornean orangutans. Am J Trop Med Hyg 64, 310–316. [Google Scholar]
  37. Woodall, J. P.(1985). Uganda S virus. In International Catalogue of Arboviruses, 3rd edn, pp. 1047–1048. Edited by N. Karabatsos. San Antonio, Texas: The American Society of Tropical Medicine and Hygiene.
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vol. , part 1, pp. 87 - 94

Disulfide bridges in the flavivirus envelope glycoprotein

 



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