Phylogeny of Comatulidae (Echinodermata: Crinoidea: Comatulida): A new classification and an assessment of morphological characters for crinoid taxonomy
Graphical abstract
Introduction
Extant crinoids belong to Articulata, the only crinoid lineage of the four currently recognized to survive the end-Paleozoic extinction (Hess and Messing, 2011). Among extant articulates, over 80% of the ∼650 accepted species belong to order Comatulida (Rouse et al., 2013, Hemery et al., 2013), most members of which shed the postlarval stalk and take up a non-sessile existence as feather stars (Holland, 1991, Haig and Rouse, 2008). Contemporary taxonomy of extant crinoids dates chiefly from 1907 to 1909, when Clark, 1907a, Clark, 1908a, Clark, 1908b, Clark, 1909a, Clark, 1909b, Clark, 1909c described 75 genera and 17 family-level taxa, chiefly feather stars. Although a few families and genera have since been revised (e.g., Hoggett and Rowe, 1986, Rowe et al., 1986, White et al., 2001, Messing, 2001, Messing and White, 2001, Hess and Messing, 2011), Clark’s more than 100 publications, including a five-volume monograph (totaling more than 4100 pages) (Clark, 1915a, Clark, 1921a, Clark, 1931, Clark, 1941, Clark, 1947, Clark, 1950, Clark and Clark, 1967), remain the foundation for current morphologically-based classification of the group. However, recent molecular analyses spanning Articulata (Hemery et al., 2013, Rouse et al., 2013) have revealed serious taxonomic inadequacies and indicate that extensive revision is required.
Among feather stars, Comatulidae Fleming, 1828 (Fig. 1), includes approximately 95 accepted nominal species and dominates tropical reef crinoid faunas worldwide in terms of both species-richness and abundance (Messing, 2001). Although the name Comasteridae A.H. Clark (1908a), has been uniformly applied to this family for just over a century, we use here the family name Comatulidae Fleming (1828) and ‘comatulid’ with reference to Comatulidae, because the former is clearly a junior synonym and should not be used (see Appendix A). Comatulidae are distinguished from other feather stars by two easily recognized and arguably apomorphic features. (1) Several to many distal segments of at least a few proximal pinnules bear one or two blade- or knob-like projections that together form a comb-like structure. (2) In most genera and species, the mouth lies off-center or near the margin on the oral surface, or tegmen (Fig. 2). Previous molecular studies (Hemery et al., 2013, Rouse et al., 2013) recovered Comatulidae as monophyletic with strong support, but White et al. (2001) and Rouse et al. (2013) suggested paraphyly for subfamilies and some genera. Fossils attributed to this family date to the early Miocene (Simms et al., 1993). Rouse et al. (2013) suggested that it is likely a much older clade, or that it has a faster rate of molecular evolution than most other extant crinoid clades.
The most recent morphological classification places the species in 21 genera and four subfamilies (Hess and Messing, 2011, Messing, 2001): Comatulinae; Capillasterinae; Comasterinae; and Phanogeniinae. (Table 1 lists authorship for all taxa.) These subfamilies are distinguished chiefly by differences among patterns of articulation between proximal brachials (Fig. 3), whereas ray branching patterns, cirrus ornamentation, ossicle proportions, and, more recently, pinnule comb structure diagnose genera (Fig. 4). However, the current morphology-based classification suffers from a lack of consensus about character homologies (e.g., structure, derivation and placement of ligamentary articulations) (A.H. Clark, 1931, Hoggett and Rowe, 1986, Messing, 2001, Rowe et al., 1986). Identification is further confounded by substantial ontogenetic changes and morphological variation based on environmental conditions (e.g., mouth position, number of arms and cirri, and color variations (see Messing, 1998, Messing, 2001, Owen et al., 2009)).
In this paper, we re-assess the phylogeny, evaluate morphological characters, and revise the classification of Comatulidae accordingly. To this end, we sequenced DNA for part or all of seven genes (nuclear and mitochondrial) from 56 terminals (plus four outgroup species) representing 17 of the 21 accepted genera. These genes were concatenated and analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. To assess morphological transformation, we mapped traits on the molecular phylogenetic results. We provide a revised classification of the subfamilies and three genera.
Section snippets
Taxon sampling
Fifty-six specimens were included in this study, representing 43 of the approximately 95 currently accepted Comatulidae species. Crinoids were collected chiefly using scuba. A few animals were collected via submersible and remotely operated vehicle (ROV). Individuals were either released (if definitively identified in the field) or retained as vouchers, either preserved in ethanol or dried. Tissue subsamples were placed in ethanol. Specimens were deposited at or obtained from the Australian
Results
Table 2 lists the nominal species and terminals used in this study with the novel sequences generated here, as well as those obtained from Genbank. Sequences of all seven genes were obtained for 31 of the 60 included terminals. Sequencing difficulties permitted amplification of only six genes for 12 terminals, five genes for eight, three genes for one, and one gene for one. Only three genes (COI, 16S, and 28S) were available for the terminals incorporated from Hemery et al. (2013). MP and ML
Taxonomic implications
This molecular study, based on concatenated sequences of seven genes (two nuclear, five mitochondrial), from 60 crinoid terminals representing at least 46 Comatulidae species and 17 of the 21 currently recognized genera, provides the most complete picture of the phylogeny of Comatulidae to date. White et al. (2001) included 25 species of Comatulidae from 11 genera, though with data from 16S rDNA only, resulting in low support for most relationships; only five nodes had >90% bootstrap support in
Acknowledgments
We thank Nerida Wilson (Western Australian Museum) for collecting additional specimens used in this study. Thierry Laperousaz, South Australian Museum, Adelaide, SA; John Slapcinsky Florida Museum of Natural History, Gainesville, FL, and Harim Cha, Scripps Institution of Oceanography, University of California San Diego, CA, kindly arranged loans of specimens. We thank Philippe Bouchet (Muséum national d’Histoire naturelle, Paris), who invited MMS and GWR to be part of the “Papua New Guinea
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