1887

Abstract

The production of itaconate by macrophages was only discovered in 2011. An increasing number of studies have since revealed essential biological functions for this small molecule, ranging from antimicrobial to immunomodulator. The antibacterial role of itaconate has however been questioned because the estimated concentration of itaconate in macrophages (low-millimolar) is lower than the minimum inhibitory concentration (MIC) of itaconate reported for several bacterial strains (low-to-mid-millimolar). We note that some of these investigations have tended to ignore the high acidity of this small diacid (pKas 3.85 and 5.45), thereby potentially biassing activity measurements. We measured the MIC of itaconate in (not known to metabolize itaconate) and in serovar Typhimurium (known to metabolize itaconate) at varying pH values to probe the effect that pH has on itaconate toxicity. Herein, we demonstrate that the antimicrobial effect of itaconate is dependent upon the pH of the media and that itaconate does have antimicrobial activity at biologically relevant pH and concentrations. Under nutrient-poor conditions, the antimicrobial activity of itaconate in both and . Typhimurium increased approximately 200-fold when the pH was dropped by one unit, whereas itaconate was not found to be toxic under nutrient rich conditions. Our results also reveal that the activity of itaconate is synergistic with acidity, yet is not a function of increased permeability with protonation. Similar experiments performed with succinate (a pKa-matched diacid) yielded drastically different results, consistent with a target-based mechanism of action for itaconate. Overall, our work shows the importance of controlling the pH when performing experiments with itaconic acid.

Funding
This study was supported by the:
  • Fonds de Recherche du Québec (Award FRQ-RQRM-UdeM initiative)
    • Principle Award Recipient: KarineAuclair
  • Fonds de Recherche du Québec (Award AUDC-263504)
    • Principle Award Recipient: KarineAuclair
  • CIHR (Award PJT-166175)
    • Principle Award Recipient: KarineAuclair
  • CIHR (Award PJ3-159883)
    • Principle Award Recipient: KarineAuclair
Loading

Article metrics loading...

/content/journal/micro/10.1099/mic.0.001050
2021-05-21
2024-05-03
Loading full text...

Full text loading...

/deliver/fulltext/micro/167/5/mic001050.html?itemId=/content/journal/micro/10.1099/mic.0.001050&mimeType=html&fmt=ahah

References

  1. Strelko CL, Lu W, Dufort FJ, Seyfried TN, Chiles TC et al. Itaconic acid is a mammalian metabolite induced during macrophage activation. J Am Chem Soc 2011; 133:16386–16389 [View Article][PubMed]
    [Google Scholar]
  2. Michelucci A, Cordes T, Ghelfi J, Pailot A, Reiling N et al. Immune-responsive gene 1 protein links metabolism to immunity by catalyzing itaconic acid production. Proc Natl Acad Sci U S A 2013; 110:7820–7825 [View Article][PubMed]
    [Google Scholar]
  3. O'Neill LAJ, Artyomov MN. Itaconate: the poster child of metabolic reprogramming in macrophage function. Nat Rev Immunol 2019; 19:273–281 [View Article][PubMed]
    [Google Scholar]
  4. Cordes T, Michelucci A, Hiller K. Itaconic acid: the surprising role of an industrial compound as a mammalian antimicrobial metabolite. Annu Rev Nutr 2015; 35:451–473 [View Article][PubMed]
    [Google Scholar]
  5. Lampropoulou V, Sergushichev A, Bambouskova M, Nair S, Vincent EE et al. Itaconate links inhibition of succinate dehydrogenase with macrophage metabolic remodeling and regulation of inflammation. Cell Metab 2016; 24:158–166 [View Article][PubMed]
    [Google Scholar]
  6. Qin W, Qin K, Zhang Y, Jia W, Chen Y et al. S-glycosylation-based cysteine profiling reveals regulation of glycolysis by itaconate. Nat Chem Biol 2019; 15:983–991 [View Article][PubMed]
    [Google Scholar]
  7. Nair S, Huynh JP, Lampropoulou V, Loginicheva E, Esaulova E et al. Irg1 expression in myeloid cells prevents immunopathology during M. tuberculosis infection. J Exp Med 2018; 215:1035–1045 [View Article][PubMed]
    [Google Scholar]
  8. Bambouskova M, Gorvel L, Lampropoulou V, Sergushichev A, Loginicheva E et al. Electrophilic properties of itaconate and derivatives regulate the IκBζ-ATF3 inflammatory axis. Nature 2018; 556:501–504 [View Article][PubMed]
    [Google Scholar]
  9. Mills EL, Ryan DG, Prag HA, Dikovskaya D, Menon D et al. Itaconate is an anti-inflammatory metabolite that activates Nrf2 via alkylation of Keap1. Nature 2018; 556:113–117 [View Article][PubMed]
    [Google Scholar]
  10. Seim GL, Britt EC, John SV, Yeo FJ, Johnson AR et al. Two-Stage metabolic remodelling in macrophages in response to lipopolysaccharide and interferon-γ stimulation. Nat Metab 2019; 1:731–742 [View Article][PubMed]
    [Google Scholar]
  11. Cordes T, Lucas A, Divakaruni AS, Murphy AN, Cabrales P et al. Itaconate modulates tricarboxylic acid and redox metabolism to mitigate reperfusion injury. Mol Metab 2020; 32:122–135 [View Article][PubMed]
    [Google Scholar]
  12. Daniels BP, Kofman SB, Smith JR, Norris GT, Snyder AG et al. The nucleotide sensor ZBP1 and kinase RIPK3 induce the enzyme IRG1 to promote an antiviral metabolic state in neurons. Immunity 2019; 50:64–76 [View Article][PubMed]
    [Google Scholar]
  13. Naujoks J, Tabeling C, Dill BD, Hoffmann C, Brown AS et al. Ifns modify the proteome of Legionella-Containing vacuoles and restrict infection via IRG1-Derived itaconic acid. PLoS Pathog 2016; 12:e1005408 [View Article][PubMed]
    [Google Scholar]
  14. Sasikaran J, Ziemski M, Zadora PK, Fleig A, Berg IA. Bacterial itaconate degradation promotes pathogenicity. Nat Chem Biol 2014; 10:371–377 [View Article][PubMed]
    [Google Scholar]
  15. Hammerer F, Chang JH, Duncan D, Castaneda Ruiz A, Auclair K. Small molecule restores itaconate sensitivity in Salmonella enterica: A potential new approach to treating bacterial infections. Chembiochem 2016; 17:1513–1517 [View Article][PubMed]
    [Google Scholar]
  16. Höner Zu Bentrup K, Miczak A, Swenson DL, Russell DG. Characterization of activity and expression of isocitrate lyase in Mycobacterium avium and Mycobacterium tuberculosis . J Bacteriol 1999; 181:7161–7167 [View Article][PubMed]
    [Google Scholar]
  17. McFadden BA, Purohit S. Itaconate, an isocitrate lyase-directed inhibitor in Pseudomonas indigofera . J Bacteriol 1977; 131:136–144 [View Article][PubMed]
    [Google Scholar]
  18. McKinney JD, Honer zu Bentrup K, Munoz-Elias EJ, Miczak A, Chen B et al. Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase. Nature 2000; 406:735–738 [View Article][PubMed]
    [Google Scholar]
  19. Fang FC, Libby SJ, Castor ME, Fung AM. Isocitrate lyase (ACEA) is required for Salmonella persistence but not for acute lethal infection in mice. Infect Immun 2005; 73:2547–2549 [View Article][PubMed]
    [Google Scholar]
  20. Ruetz M, Campanello GC, Purchal M, Shen H, McDevitt L et al. Itaconyl-CoA forms a stable biradical in methylmalonyl-CoA mutase and derails its activity and repair. Science 2019; 366:589–593 [View Article][PubMed]
    [Google Scholar]
  21. Shen H, Campanello GC, Flicker D, Grabarek Z, Hu J et al. The human knockout gene CLYBL connects itaconate to vitamin B12 . Cell 2017; 171:771–782 [View Article][PubMed]
    [Google Scholar]
  22. Hillier S, Charnetzky WT. Glyoxylate bypass enzymes in Yersinia species and multiple forms of isocitrate lyase in Yersinia pestis . J Bacteriol 1981; 145:452–458 [View Article][PubMed]
    [Google Scholar]
  23. Nguyen TV, Alfaro AC, Young T, Green S, Zarate E et al. Itaconic acid inhibits growth of a pathogenic marine Vibrio strain: a metabolomics approach. Sci Rep 2019; 9:5937 [View Article][PubMed]
    [Google Scholar]
  24. Bellion E, Kelley RL. Inhibition by itaconate of growth of methylotrophic bacteria. J Bacteriol 1979; 138:519–522 [View Article][PubMed]
    [Google Scholar]
  25. Shimamoto G, Berk RS. Taurine catabolism. III. Evidence for the participation of the glyoxylate cycle. Biochim Biophys Acta 1980; 632:399–407 [View Article][PubMed]
    [Google Scholar]
  26. Luan HH, Medzhitov R. Food fight: role of itaconate and other metabolites in antimicrobial defense. Cell Metab 2016; 24:379–387 [View Article][PubMed]
    [Google Scholar]
  27. Chen M, Sun H, Boot M, Shao L, Chang SJ et al. Itaconate is an effector of a Rab GTPase cell-autonomous host defense pathway against Salmonella . Science 2020; 369:450–455 [View Article][PubMed]
    [Google Scholar]
  28. Braude E, Nachod F. eds Determination of Organic Structures by Physical Methods, 1st ed. New York: Academic Press; 1955
    [Google Scholar]
  29. Coban HB. Organic acids as antimicrobial food agents: applications and microbial productions. Bioprocess Biosyst Eng 2020; 43:569–591 [View Article][PubMed]
    [Google Scholar]
  30. Y-W I, Kim J-J, Kim H-J, S-W O. Antimicrobial activities of acetic acid, citric acid and lactic acid against Shigella species. Journal of Food Safety 2013; 33:79–85
    [Google Scholar]
  31. Theron MM, Lues JFR, Acids O. And meat preservation: a review. Food Rev Int 2007; 23:141–158
    [Google Scholar]
  32. Zhu X, Lei H, Wu J, Li JV, Tang H et al. Systemic responses of BALB/c mice to Salmonella typhimurium infection. J Proteome Res 2014; 13:4436–4445 [View Article][PubMed]
    [Google Scholar]
  33. Hersch SJ, Navarre WW. The Salmonella LysR family regulator, RipR activates the SPI-13 encoded itaconate degradation cluster. Infect Immun 2020; 88: [View Article][PubMed]
    [Google Scholar]
  34. Palomino JC, Martin A, Camacho M, Guerra H, Swings J et al. Resazurin microtiter assay plate: simple and inexpensive method for detection of drug resistance in Mycobacterium tuberculosis . Antimicrob Agents Chemother 2002; 46:2720–2722 [View Article][PubMed]
    [Google Scholar]
  35. Doern CD. When does 2 plus 2 equal 5? A review of antimicrobial synergy testing. J Clin Microbiol 2014; 52:4124–4128 [View Article][PubMed]
    [Google Scholar]
  36. Odds FC. Synergy, antagonism, and what the chequerboard puts between them. J Antimicrob Chemother 2003; 52:1 [View Article][PubMed]
    [Google Scholar]
  37. Wang H, Fedorov AA, Fedorov EV, Hunt DM, Rodgers A et al. An essential bifunctional enzyme in Mycobacterium tuberculosis for itaconate dissimilation and leucine catabolism. Proc Natl Acad Sci U S A 2019; 116:15907–15913 [View Article][PubMed]
    [Google Scholar]
  38. Rittenhouse JW, McFadden BA. Inhibition of isocitrate lyase from Pseudomonas indigofera by itaconate. Arch Biochem Biophys 1974; 163:79–86 [View Article][PubMed]
    [Google Scholar]
  39. Nolte JC, Schurmann M, Schepers CL, Vogel E, Wubbeler JH et al. Novel characteristics of succinate coenzyme A (succinate-CoA) ligases: conversion of malate to malyl-CoA and CoA-thioester formation of succinate analogues in vitro. Appl Environ Microbiol 2014; 80:166–176 [View Article][PubMed]
    [Google Scholar]
  40. Williams JO, Roche TE, McFadden BA. Mechanism of action of isocitrate lyase from Pseudomonas indigofera . Biochemistry 1971; 10:1384–1390 [View Article][PubMed]
    [Google Scholar]
  41. Dawson RMC, Elliott DC, Elliott WH, Jones KM. Data for Biochemical Research, 1st ed. Oxford: Clarendon Press; 1959
    [Google Scholar]
  42. Karinou E, Compton EL, Morel M, Javelle A. The Escherichia coli SLC26 homologue YchM (DauA) is a C(4)-dicarboxylic acid transporter. Mol Microbiol 2013; 87:623–640 [View Article][PubMed]
    [Google Scholar]
  43. Srinivasan L, Baars TL, Fendler K, Michel H. Functional characterization of solute carrier (SLC) 26/sulfate permease (SulP) proteins in membrane mimetic systems. Biochim Biophys Acta 2016; 1858:698–705 [View Article][PubMed]
    [Google Scholar]
  44. Sa-Pessoa J, Paiva S, Ribas D, Silva IJ, Viegas SC et al. SATP (YaaH), a succinate-acetate transporter protein in Escherichia coli . Biochem J 2013; 454:585–595 [View Article][PubMed]
    [Google Scholar]
  45. Rosenberg G, Yehezkel D, Hoffman D, Mattioli CC, Fremder M et al. Host succinate is an activation signal for Salmonella virulence during intracellular infection. Science 2021; 371:400–405 [View Article][PubMed]
    [Google Scholar]
  46. Alpuche Aranda CM, Swanson JA, Loomis WP, Miller SI. Salmonella typhimurium activates virulence gene transcription within acidified macrophage phagosomes. Proc Natl Acad Sci U S A 1992; 89:10079–10083 [View Article][PubMed]
    [Google Scholar]
  47. Geisow MJ, D'Arcy Hart P, Young MR. Temporal changes of lysosome and phagosome pH during phagolysosome formation in macrophages: studies by fluorescence spectroscopy. J Cell Biol 1981; 89:645–652 [View Article][PubMed]
    [Google Scholar]
  48. Flannagan RS, Cosio G, Grinstein S. Antimicrobial mechanisms of phagocytes and bacterial evasion strategies. Nat Rev Microbiol 2009; 7:355–366 [View Article][PubMed]
    [Google Scholar]
  49. MacMicking JD, Taylor GA, McKinney JD. Immune control of tuberculosis by IFN-gamma-inducible LRG-47. Science 2003; 302:654–659 [View Article][PubMed]
    [Google Scholar]
  50. Schaible UE, Sturgill-Koszycki S, Schlesinger PH, Russell DG. Cytokine activation leads to acidification and increases maturation of Mycobacterium avium-containing phagosomes in murine macrophages. J Immunol 1998; 160:1290–1296[PubMed]
    [Google Scholar]
  51. Sturgill-Koszycki S, Schlesinger PH, Chakraborty P, Haddix PL, Collins HL et al. Lack of acidification in Mycobacterium phagosomes produced by exclusion of the vesicular proton-ATPase. Science 1994; 263:678–681 [View Article][PubMed]
    [Google Scholar]
  52. Castanie-Cornet MP, Penfound TA, Smith D, Elliott JF, Foster JW. Control of acid resistance in Escherichia coli . J Bacteriol 1999; 181:3525–3535 [View Article][PubMed]
    [Google Scholar]
  53. Wilmes-Riesenberg MR, Bearson B, Foster JW, Curtis R. Role of the acid tolerance response in virulence of Salmonella typhimurium . Infect Immun 1996; 64:1085–1092 [View Article][PubMed]
    [Google Scholar]
  54. Stratford M, Anslow PA. Evidence that sorbic acid does not inhibit yeast as a classic 'weak acid preservative'. Lett Appl Microbiol 1998; 27:203–206 [View Article][PubMed]
    [Google Scholar]
  55. Lee IY, Gruber TD, Samuels A, Yun M, Nam B et al. Structure-Activity relationships of antitubercular salicylanilides consistent with disruption of the proton gradient via proton shuttling. Bioorg Med Chem 2013; 21:114–126 [View Article][PubMed]
    [Google Scholar]
  56. van Beilen JW, Teixeira de Mattos MJ, Hellingwerf KJ, Brul S. Distinct effects of sorbic acid and acetic acid on the electrophysiology and metabolism of Bacillus subtilis . Appl Environ Microbiol 2014; 80:5918–5926 [View Article][PubMed]
    [Google Scholar]
  57. Krebs HA, Wiggins D, Stubbs M, Sols A, Bedoya F. Studies on the mechanism of the antifungal action of benzoate. Biochem J 1983; 214:657–663 [View Article][PubMed]
    [Google Scholar]
  58. Piper PW. Yeast superoxide dismutase mutants reveal a pro-oxidant action of weak organic acid food preservatives. Free Radic Biol Med 1999; 27:1219–1227 [View Article][PubMed]
    [Google Scholar]
  59. Russell JB, Diez-Gonzalez F. The effects of fermentation acids on bacterial growth. Adv Microb Physiol 1998; 39:205–234 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/mic.0.001050
Loading
/content/journal/micro/10.1099/mic.0.001050
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error