Elsevier

Gene

Volume 741, 30 May 2020, 144566
Gene

Research paper
Complete genome analysis of Glutamicibacter creatinolyticus from mare abscess and comparative genomics provide insight of diversity and adaptation for Glutamicibacter

https://doi.org/10.1016/j.gene.2020.144566Get rights and content
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Highlights

  • First sequenced Glutamicibacter creatinolyticus genome isolated from a mare abscess.

  • The LGCM 259 genome carries important bacterial virulence factors.

  • Genus presented genomic islands that show insights of diversity and adaptation.

  • The LGCM 259 has resistance genes to 6 different classes of antibiotics.

Abstract

Bacteria of the genus Glutamicibacter are considered ubiquitous because they can be found in soil, water and air. They have already been isolated from different habitats, including different types of soil, clinical samples, cheese and plants. Glutamicibacter creatinolyticus is a Gram-positive bacterium important to various biotechnological processes, however, as a pathogen it is associated to urinary tract infections and bacteremia. Recently, Glutamicibacter creatinolyticus LGCM 259 was isolated from a mare, which displayed several diffuse subcutaneous nodules with heavy vascularization. In this study, sequencing, genomic analysis of G. creatinolyticus LGCM 259 and comparative analyses were performed among 4 representatives of different members of genus from different habitats, available in the NCBI database. The LGCM 259 strain’s genome carries important factors of bacterial virulence that are essential in cell viability, virulence, and pathogenicity. Genomic islands were predicted for 4 members of genus Glutamicibacter, showing a high number of GEIs, which may reflect a high interspecific diversity and a possible adaptive mechanism responsible for the survival of each species in its specific niche. Furthermore, G. creatinolyticus LGCM 259 shares syntenic regions, albeit with a considerable loss of genes, in relation to the other species. In addition, G. creatinolyticus LGCM 259 presents resistance genes to 6 different classes of antibiotics and heavy metals, such as: copper, arsenic, chromium and cobalt-zinc-cadmium. Comparative genomics analyses could contribute to the identification of mobile genetic elements particular to the species G. creatinolyticus compared to other members of genus. The presence of specific regions in G. creatinolyticus could be indicative of their roles in host adaptation, virulence, and the characterization of astrain that affects animals.

Abbreviations

BHI
Brain heart infusion agar
°C
degree celsius
BRIG
BLAST Ring Image Generator
CDS
Coding Sequence
EDTA
Ethylenediamine tetraacetic acid
GEIs
Genomic island
kDa
kilodalton
Mb
Megabases
Min
minutes
Mis
metabolic islands
NaAc
sodium acetate
NaCl
sodium Chloride
NCBI
National Center for Biotechnology Information
NGS
Next-Generation Sequencing
PAIs
pathogenicity islands
pb
base pair(s)
PCR
Polymerase Chain Reaction
RIs
resistance
rRNA
ribosomal RNA
Sec
seconds
Sis
symbiotic islands
Tris HCI
Tris Hydrochloride
v
version
VFDB
virulence Factor Database

Keywords

Mare
Pathogenicity
Resistance
Virulence factors
Sequencing
Genomic islands

Cited by (0)

1

Contributed equally.