Skip to main content
Log in

Molecular Markers for Assessing Must Varietal Origin

  • Published:
Food Analytical Methods Aims and scope Submit manuscript

Abstract

Wine quality and market value greatly depend on the grapevine varietal composition, which may be characteristic of specific regions. In order to defend the distinct regions, Denominations of Origin were defined to protect against fraudulent practices. In this study, we evaluated the efficiency of two microsatellite-based systems (microsatellite (SSR) and intermicrosatellite (ISSR)) for must varietal composition determination and their potential role in certification purposes. Eleven Vitis vinifera L. varieties from leaf and monovarietal must DNA samples were screened with six SSR and 14 ISSR primers to discriminate polymorphisms. Principal coordinates analysis was performed with DCENTER on the resultant data using unweighted pair group mathematical average and revealed that ISSRs markers were not suitable for certification procedures, whereas nuclear SSR markers presented a complete correspondence between leaf and must samples, demonstrating that they were adequate for traceability purposes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  • Agrimonti C, Vietina M, Pafundo S, Marmiroli N (2011) The use of food genomics to ensure the traceability of olive oil. Trends Food Sci Tech 22:237–244

    Article  CAS  Google Scholar 

  • Alleweldt G, Dettweiler E (1986) Ampelographic studies to characterize grapevine varieties. Vignevini 13:56–59

    Google Scholar 

  • Almadanim MC, Baleiras-Couto MM, Pereira HS, Carneiro LC, Fevereiro P, Eiras-Dias JE, Morais-Cecilio L, Viegas W, Veloso MM (2007) Genetic diversity of the grapevine (Vitis vinifera L.) varieties most utilized for wine production in Portugal. Vitis 46:111–116

    Google Scholar 

  • Baleiras-Couto MD, Eiras-Dias JE (2006) Detection and identification of grape varieties in must and wine using nuclear and chloroplast microsatellite markers. Anal Chim Acta 563:283–291

    Article  CAS  Google Scholar 

  • Benjak A, Ercisli S, Vokurka A, Maletic E, Pejic I (2005) Genetic relationships among grapevine cultivars native to Croatia, Greece and Turkey. Vitis 44:73–77

    CAS  Google Scholar 

  • Botta R, Scott NS, Eynard I, Thomas MR (1995) Evaluation of microsatellite sequence-tagged site markers for characterizing Vitis vinifera cultivars. Vitis 34:99–102

    Google Scholar 

  • Bowers JE, Dangl GS, Vignani R, Meredith CP (1996) DNA Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome 39:628–633

    Article  CAS  Google Scholar 

  • Bowers JE, Dangl GS, Meredith CP (1999) Development and characterization of additional microsatellite DNA markers for grape. Am J Enol Vitic 50:243–246

    CAS  Google Scholar 

  • Cipriani G, Frazza G, Peterlunger E, Testolin R (1994) Grapevine fingerprinting using microsatellite repeats. Vitis 33:211–215

    CAS  Google Scholar 

  • Cipriani G, Spadotto A, Jurman I, Gaspero GDi, Crespan M, Meneghetti S, Frare E, Vignani R, Cresti M, Morgante M, Pezzotti M, Pe E, Policriti A, Testolin R (2010) The SSR-based molecular profile of 1005 grapevine (Vitis vinifera L.) accessions uncovers new synonymy and parentages, and reveals a large admixture amongst varieties of different geographic origin. Theor Appl Genet 121:1569–1585

    Article  Google Scholar 

  • Cunha J, Santos MT, Carneiro LC, Fevereiro P, Eiras-Dias JE (2009) Portuguese traditional grapevine cultivars and wild vines (Vitis vinifera L.) share morphological and genetic traits. Genet Resour Crop Evol 56:975–989

    Article  Google Scholar 

  • Dettweiler E (1993) Evaluation of breeding characteristics in Vitis. Influence of climate on morphologic characteristics of grapevines. Vitis 32:249–253

    Google Scholar 

  • Dhanorkar VM, Tamhankar SA, Patil SG, Rao VS (2005) ISSR-PCR for assessment of genetic relationship among grape varieties cultivated in India. Vitis 44:127–131

    CAS  Google Scholar 

  • Dimitrovska M, Bocevska M, Dimitrovski D, Murkovic M (2011) Anthocyanin composition of Vranec, Cabernet Sauvignon, Merlot and Pinot Noir grapes as indicator of their varietal differentiation. Eur Food Res Technol 232(4):591–600

    Article  CAS  Google Scholar 

  • Doveri S, Lee D (2007) Development of sensitive crop-specific polymerase chain reaction assays using 5S DNA: applications in food traceability. J Agric Food Chem 55:4640–4644

    Article  CAS  Google Scholar 

  • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Focus 12:13–15

    Google Scholar 

  • Fanizza G, Chaabane R, Lamaj F, Ricciardi L, Resta P (2003) AFLP analysis of genetic relationships among aromatic grapevines (Vitis vinifera). Theor Appl Genet 107:1043–1047

    Article  CAS  Google Scholar 

  • Faria MA, Magalhães R, Ferreira MA, Meredith CP, Monteiro FF (2000) Vitis vinifera must varietal authentication using microsatellite DNA analysis (SSR). J Agric Food Chem 48:1096–1100

    Article  CAS  Google Scholar 

  • Faria MA, Nunes E, Oliveira MBPP (2008) Relative quantification of Vitis vinifera L. varieties in musts by microsatellite DNA analysis. Eur Food Res Technol 227:845–850

    Article  CAS  Google Scholar 

  • Garcia-Beneytez E, Maria VM, Joaquin B, Maria CP, Javier I (2002) Application of a DNA analysis method for the cultivar identification of grape musts and experimental and commercial wines of Vitis vinifera L. using microsatellite markers. J Agric Food Chem 50:6090–6096

    Article  CAS  Google Scholar 

  • Godwin ID, Aitken EAB, Smith LW (1997) Application of inter-simple sequence repeat (ISSR) markers to plant genetics. Electrophoresis 18:1524–1528

    Article  CAS  Google Scholar 

  • Gupta M, Chyi Y-S, Romero-Severson J, Owen JL (1994) Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple-sequence repeats. Theor Appl Genet 89:998–1006

    Article  CAS  Google Scholar 

  • Herrera R, Cares V, Wilkinson M, Caligari PDS (2002) Characterization of the genetic variation and cultivar identification of Vitis vinifera cultivars using RAPD and anchored microsatellites markers. Euphytica 124:139–145

    Article  CAS  Google Scholar 

  • Ibañez J, De Andrés MT, Molino A, Borrego J (2003) Genetic study of key Spanish grapevine varieties through microsatellite analysis. Am J Enol Vitic 54:22–30

    Google Scholar 

  • Intrieri M, Muleo R, Buiatti M (2007) Choloroplast DNA polymorphism as molecular markers to identify cultivars of Olea europaea L. J Horticult Sci Biotechnol 82:109–113

    CAS  Google Scholar 

  • Jérôme M, Martinsohn JT, Ortega D, Carreau P, Verrez-Bagnis V, Mouchel O (2008) Toward fish and seafood traceability: anchovy species determination in fish products by molecular markers and support through a public domain database. J Agric Food Chem 56:3460–3469

    Article  Google Scholar 

  • Le Cunff L, Fournier-Level A, Laucou V, Vezzulli S, Lacombe T, Adam-Blondon A-F, Boursiquot J-M, This P (2008) Construction of nested genetic core collections to optimize the exploitation of natural diversity in Vitis vinifera L. subsp. sativa. BMC Plant Biol 8:31

    Article  Google Scholar 

  • Lodhi MA, Ye GN, Weeden NF, Reisch BI (1994) A simple and efficient method for DNA extraction from grapevine cultivars and Vitis species. Plant Mol Biol Rep 12:6–13

    Article  CAS  Google Scholar 

  • Lopes MS, Sefc KM, Eiras-Dias JE, Steinkellner H, Câmara Machado ML, Câmara Machado A (1999) The use of microsatellites for germplasm management in a Portuguese grapevine collection. Theor Appl Genet 99:733–739

    Article  CAS  Google Scholar 

  • Lopes MS, Rodrigues dos Santos M, Eiras Dias JE, Mendonça D, Câmara Machado A (2006) Discrimination of Portuguese grapevines based on microsatellite markers. J Biotechnol 127:34–44

    Article  CAS  Google Scholar 

  • Martins-Lopes P, Gomes S, Santos E, Guedes-Pinto H (2008) DNA Markers for Portuguese olive oil fingerprinting. J Agric Food Chem 56:11786–11791

    Article  CAS  Google Scholar 

  • Moreno S, Martin JP, Ortiz JM (1998) Inter-simple sequence repeats PCR for characterization of closely related grapevine germplasm. Euphytica 110:117–125

    Article  Google Scholar 

  • Nakamura S, Haraguchi K, Mitani N, Ohtsubo K (2007) Novel preparation method of template DNAs from wine for PCR to differentiate grape (Vitis vinifera L.) Cultivar. J Agric Food Chem 55:10388–10395

    Article  CAS  Google Scholar 

  • OIV (2009) OIV descriptor list for grape varieties and Vitis species (2nd edition). http://www.oiv.int/oiv/info/enplubicationoiv#grape. Accessed Jan 2012

  • Ortiz JM, Martin JP, Borrego J, Chavez J, Rodriguez I, Munõz G, Cabello F (2004) Molecular and morphological characterization of a Vitis gene bank for the establishment of a base collection. Genet Resour Crop Evol 51:403–409

    Article  Google Scholar 

  • Pafundo S, Agrimonti C, Maestri E, Marmiroli N (2007) Applicability of SCAR markers to food genomics: olive oil traceability. J Agric Food Chem 55:6052–6059

    Article  CAS  Google Scholar 

  • Pereira L, Guedes-Pinto H, Martins-Lopes P (2011a) An enhanced method for Vitis vinifera L. DNA extraction from wines. Am J Enol Vitic 62(4):547–552

    Article  CAS  Google Scholar 

  • Pereira L, Zenol G, Eiras-Dias JE, Guedes-Pinto H, Aranha J, Martins-Lopes P (2011b) Comparison of DNA extraction efficiency in commercial and experimental wines. XXXIV World Congress of Vine and Wine, The wine construction, 20-27 of June, Porto, Portugal. Section II, ID 394

  • Reddy MP, Sarla N, Siddiq EA (2002) Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica 128:9–17

    Article  Google Scholar 

  • Rodríguez-Plaza P, González R, Moreno-Arribas MV, Polo MC, Bravo G, Martínez-Zapater JM, Martínez MC, Cifuentes A (2006) Combining microsatellite markers and capillary gel electrophoresis with laser-induced fluorescence to identify the grape (Vitis vinifera) variety of musts. Eur Food Res Technol 223:625–631

    Article  Google Scholar 

  • Rohlf M (1998) NTSYS-PC. Numerical taxonomy and multivariate analysis system, version 2.02i; Department of Ecology and Evolution State University of New York: Setauket, NY

  • Sabır A, Kafkas S, Tangolar S, Büyükalaca S (2008) Genetic relationship of grape cultivars by ISSR (inter-simple sequence repeats) markers. Eur J Hortic Sci 73:84–88

    Google Scholar 

  • Santiago JL, Boso S, Martín JP, Ortiz JM, Martinez MC (2005) Characterisation and identification of grapevine cultivars (Vitis vinifera L.) from northwestern Spain using microsatellite markers and ampelometric methods. Vitis 44:67–72

    CAS  Google Scholar 

  • Savazzini F, Martinelli L (2006) DNA analysis in wines: development of methods for enhanced extraction and real-time polymerase chain reaction quantification. Anal Chim Acta 563:274–282

    Article  CAS  Google Scholar 

  • Sefc KM, Regner F, Turetschek E, Glössl J, Steinkellner H (1998) Genotyping of grapevine and rootstock cultivars using microsatellite markers. Vitis 37:15–20

    Google Scholar 

  • Sefc KM, Regner F, Turetschek E, Glössl J, Steinkellner H (1999) Identification of microsatellite sequences in Vitis riparia and their applicability for genotyping of different Vitis species. Genome 42:367–373

    CAS  Google Scholar 

  • Sefc KM, Lopes MS, Lefort F, Botta R, Robelakis-Angelakis KA, Ibanez J, Pejic I, Wagner HW, Glossl J, Steinkller H (2000) Microsatellites variability in grapevine cultivars from different European regions and evolution of assignment testing to assess the geographic origin of cultivars. Theor Appl Genet 100:498–505

    Article  Google Scholar 

  • Siret R, Boursiquot JM, Merle MH, Cabanis JC, This P (2000) Toward the authentication of varietal wines by the analysis of grape (Vitis vinifera L.) residual DNA in must and wine using microsatellite markers. J Agric Food Chem 48:5035–5040

    Article  CAS  Google Scholar 

  • Siret R, Gigaud O, Rosec JP, This P (2002) Analysis of grape Vitis vinifera L. DNA in must mixtures and experimental mixed wines using microsatellite markers. J Agric Food Chem 50:3822–3827

    Article  CAS  Google Scholar 

  • This P, Jung A, Boccacci P, Borrego J, Botta R, Costantini L, Crespan M, Dangl GS, Eisenheld C, Ferreira-Monteiro F, Grando S, Ibáñez J (2004) Development of a standard set of microsatellite reference alleles for identification of grape cultivars. Theor Appl Genet 109:1448–1458

    Article  CAS  Google Scholar 

  • Thomas MR, Scott NS (1993) Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor Appl Genet 86:985–990

    CAS  Google Scholar 

  • Veloso MM, Almadanim MC, Baleiras-Couto MM, Pereira HS, Carneiro LC, Fevereiro P, Eiras-Dias JE (2010) Microsatellite database of grapevine (Vitis vinifera L.) cultivars used for wine production in Portugal. Cienc Tec Vitivinic 25:53–61

    Google Scholar 

  • Vietina M, Agrimonti C, Marmiroli M, Bonas U, Marmiroli N (2011) Applicability of SSR markers to the traceability of monovarietal olive oils. J Sci Food Agric 91:1381–1391

    Article  CAS  Google Scholar 

  • Wu Z-L, Fang L-Y, Wang J, Shen Y-J (2009) Analysis genetic diversity of Vitis by using ISSR Markers. Acta Hort 827:125–130

    CAS  Google Scholar 

  • Zietkiewicz E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (FSR)-anchored polymerase chain reaction amplification. Genomics 20:176–183

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This work was supported by the project Genomics Applied to Portuguese Wine Traceability (PTDC/AGR-ALI/69516/2006) and a PhD grant to Leonor Pereira (SFRH/BD/44781/2008) from the Fundação para a Ciência e Tecnologia-Portugal.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Paula Martins-Lopes.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Pereira, L., Martins-Lopes, P., Batista, C. et al. Molecular Markers for Assessing Must Varietal Origin. Food Anal. Methods 5, 1252–1259 (2012). https://doi.org/10.1007/s12161-012-9369-7

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12161-012-9369-7

Keywords

Navigation