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The Cytogenetic Map of the Poncirus trifoliata (L.) Raf.A Nomenclature System for Chromosomes of All Citric Species

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Abstract

A cytogenetic map was established for the trifoliate orange, Poncirus trifoliata. Chromosome size, centromere position and CMA+ heterochromatin content were determined for each chromosome pair, together with the position of BAC clones previously described as chromosome-specific markers. Although P. trifoliata is a true biological species, heteromorphisms for the size of the heterochromatic bands in two chromosome pairs were observed. A minimum set of four BACs was proposed for chromosome identification in P. trifoliata, as well as a chromosome nomenclature that can be applied to all citrus species. The Ctv locus was assigned to chromosome 9 and the remaining linkage groups can now be integrated to this physical map. This standard nomenclature for trifoliate orange will be valuable for genome-sequencing projects in all citrus species.

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Abbreviations

BAC:

Bacterial artificial chromosome

DAPI:

4′6-diamidino-2-phenylindole

CMA:

Chromomycin A3

FISH:

Fluorescence in situ hybridization

CTV:

Citrus tristeza virus

References

  • Barrett HC, Rhodes AM (1976) A numerical taxonomic study of affinity relationships in cultivated Citrus and its close relatives. Syst Bot 1:105–136

    Article  Google Scholar 

  • Barros e Silva AE, Marques A, Santos KGB et al (2010) The evolution of CMA bands in Citrus and related genera. Chromosome Res 18:503–514

    Article  CAS  Google Scholar 

  • Befu M, Kitajima A, Ling YX et al (2000) Classification of ‘Tosa-Buntan’ pummelo (Citrus grandis [L.] Osb.), ‘Washington’ navel orange (C. sinensis [L.] Osb.) and trifoliate orange (Poncirus trifoliata [L.] Raf.) chromosomes using young leaves. J Japan Soc Hort Sci 69:22–28

    Article  CAS  Google Scholar 

  • Bernet GP, Bretó MP, Asins MJ (2004) Expressed sequence enrichment for candidate gene analysis of citrus tristeza virus resistance. Theor Appl Genet 108:592–602

    Article  PubMed  CAS  Google Scholar 

  • Brasileiro-Vidal AC, dos Santos-Serejo JA, Soares Filho WS et al (2007) A simple chromosomal marker can reliably distinguishes Poncirus from Citrus species. Genetica 129:273–279

    Article  PubMed  CAS  Google Scholar 

  • Cai Q, Guy CL, Moore GA (1994) Extension of the genetic linkage map in Citrus using random amplified polymorphic DNA (RAPD) markers and RFLP mapping of cold-acclimation responsive loci. Theor Appl Genet 89:606–614

    Article  CAS  Google Scholar 

  • Carvalho R, Soares Filho WS, Brasileiro-Vidal AC et al (2005) The relationship among lemons, limes and citron: a chromosomal comparison. Cytogenet Genome Res 109:276–282

    Article  PubMed  CAS  Google Scholar 

  • Charlesworth B, Sniegowski P, Stephan W (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215–220

    Article  PubMed  CAS  Google Scholar 

  • Chen Q, Liang G (1989) Study on the karyotype of Poncirus. Acta Bot Yunnanica 11:103–106

    Google Scholar 

  • Cornélio MTMN, Figueirôa ARS, Santos KGB et al (2003) Chromosomal relationships among cultivars of Citrus reticulata Blanco, its hybrids and related species. Plant Syst Evol 240:149–161

    Article  Google Scholar 

  • Cristofani M, Machado MA, Grattapaglia D (1999) Genetic linkage maps of Citrus sunki Hort. ex. Tan. and Poncirus trifoliata (L.) Raf. and mapping of citrus tristeza virus resistence gene. Euphytica 109:25–32

    Google Scholar 

  • Doležel J, Bartoš J, Voglmayr H et al (2003) Nuclear DNA content and genome size of trout and human. Cytometry 51:127–128

    Article  PubMed  Google Scholar 

  • Durham RE, Liou PC, Gmitter FG Jr et al (1992) Linkage of restriction fragment length polymorphisms and isozymes in Citrus. Theor Appl Genet 84:39–48

    Article  CAS  Google Scholar 

  • Gmitter FG Jr, Xiao SY, Huang S et al (1996) A localized linkage map of the citrus tristeza virus resistance gene region. Theor Appl Genet 92:688–695

    Article  CAS  Google Scholar 

  • Guerra MS (1986) Reviewing the chromosome nomenclature of Levan et al. Rev Bras Genet 9:741–743

    Google Scholar 

  • Guerra M (2009) Chromosomal variability and the origin of Citrus species. In: Mahoney CL, Springer DA (eds) Genetic diversity. Nova Science Publishers Inc, New York

    Google Scholar 

  • Guerra M, Santos KGB, Silva AEB et al (2000) Heterochromatin banding patterns in Rutaceae-Aurantioideae—a case of parallel chromosomal evolution. Am J Bot 87:35–747

    Article  Google Scholar 

  • Heslop-Harrison JS, Harrison GE, Leitch IJ (1992) Reprobing of DNA:DNA in situ hybridization preparations. Trends Genet 8:372–373

    PubMed  CAS  Google Scholar 

  • Jiang J, Gill BS, Wang GL et al (1995) Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes. Proc Natl Acad Sci USA 92:4487–4491

    Article  PubMed  CAS  Google Scholar 

  • Kayum M, Koç NK, Rokka VM (1998) Variation of the nuclear DNA content of species of subtribe Citrinae (Rutaceae). HortScience 33:1247–1250

    Google Scholar 

  • Liang G (1990) Studies on the cytotaxonomy of Citrus. I. Karyotype and evolution of 30 taxa of the genera Citrus. J Wuhan Bot Res 8:1–7

    Google Scholar 

  • Marques A, Fuchs J, Ma L et al (2011) A characterization of eu- and heterochromatin of Citrus with a focus on the condensation behaviour of 45S rDNA chromatin. Cytogenet Genome Res doi:10.1159/000323971

  • Meissner Filho PE, Soares Filho WS, Velame KVC et al (2002) Reação de porta-enxertos híbridos ao Citrus tristeza virus. Fitopatol Bras 27:312–315

    Article  Google Scholar 

  • Miranda M, Ikeda F, Endo T et al (1997) Comparative analysis on the distribution of heterochromatin in Citrus, Poncirus and Fortunella chromosomes. Chromosome Res 5:86–92

    Article  PubMed  CAS  Google Scholar 

  • Moore GA (2001) Oranges and lemons: clues to the taxonomy of Citrus from molecular markers. Trends Genet 17:536–540

    Article  PubMed  CAS  Google Scholar 

  • Moraes AP, Soares Filho WS, Guerra M (2007a) Karyotype diversity and the origin of grapefruit. Chromosome Res 15:115–121

    Article  PubMed  CAS  Google Scholar 

  • Moraes AP, Lemos RR, Brasileiro-Vidal AC et al (2007b) Chromosomal markers distinguish hybrids and non-hybrid accessions of mandarin. Cytogenet Genome Res 119:275–281

    Article  PubMed  CAS  Google Scholar 

  • Moraes AP, Mirkov TE, Guerra M (2008) Mapping the chromosomes of Poncirus trifoliata Raf. by BAC-FISH. Cytogenet Genome Res 121:277–281

    Article  PubMed  CAS  Google Scholar 

  • Pedrosa A, Schweizer D, Guerra M (2000) Cytological heterozygosity and the hybrid origin of sweet orange (Citrus sinensis (L.) Osbeck). Theor Appl Genet 100:361–367

    Article  Google Scholar 

  • Pedrosa A, Sandal N, Stougaard J et al (2002) Chromosomal map of the model legume Lotus japonicus. Genetics 161:1661–1672

    PubMed  CAS  Google Scholar 

  • Pikaard CS (2000) The epigenetics of nucleolar dominance. Trends Genet 16:495–500

    Article  PubMed  CAS  Google Scholar 

  • Preedasuttijit B, Kitajima A, Yamasaki A et al (2007) Chromosome identification and characterization in trifoliate orange (Poncirus trifoliata (L.) Raf.) by CMA and PI/DAPI staining and GISH. J Japan Soc Hort Sci 76:197–204

    Article  Google Scholar 

  • Richard GF, Pâques F (2000) Mini- and microsatellite expansions: the recombination connection. EMBO Rep 1:122–126

    Article  PubMed  CAS  Google Scholar 

  • Ruiz C, Asins MJ (2003) Comparison between Poncirus and Citrus genetic linkage maps. Theor Appl Genet 106:826–836

    PubMed  CAS  Google Scholar 

  • Sahin Çevik M, Moore GA (2007) Construction of a genetic linkage map of Citrus with random amplified polymorphic DNA (RAPD) markers using a progeny population from a complex intergeneric cross. Turk J Bot 31:79–86

    Google Scholar 

  • Samuel R, Ehrendorfer F, Chase MW et al (2001) Phylogenetic analyses of Aurantioideae (Rutaceae) based on non-coding plastid DNA sequences and phytochemical features. Plant Biol 3:77–87

    Article  CAS  Google Scholar 

  • Sankar AA, Moore GA (2001) Evaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of the genetic linkage map. Theor Appl Genet 102:206–214

    Article  CAS  Google Scholar 

  • Torres AM, Mau-Lastovicka T, Williams TE et al (1985) Segregation distortion and linkage of Citrus and Poncirus isozyme genes. J Hered 76:289–294

    CAS  Google Scholar 

  • Wanzenböck EM, Schöfer C, Schweizer D et al (1997) Ribosomal transcription units integrated via T-DNA transformation associate with the nucleolus and do not require upstream repeat sequences for activity in Arabidopsis thaliana. Plant J 11:1007–1016

    Article  PubMed  Google Scholar 

  • Yang ZN, Ye XR, Choi S et al (2001) Construction of a 1.2 Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf. Genome 44:382–393

    PubMed  CAS  Google Scholar 

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Acknowledgements

We thank Getúlio de Souza Vieira (Embrapa Cassava&Fruits) for collecting the seeds. This research was supported by the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq).

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Correspondence to Marcelo Guerra.

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Communicated by Paul Moore

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da Costa Silva, S., Marques, A., dos Santos Soares Filho, W. et al. The Cytogenetic Map of the Poncirus trifoliata (L.) Raf.A Nomenclature System for Chromosomes of All Citric Species. Tropical Plant Biol. 4, 99–105 (2011). https://doi.org/10.1007/s12042-011-9072-7

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  • DOI: https://doi.org/10.1007/s12042-011-9072-7

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