Abstract
A total of 350 samples were analyzed to estimate zebu gene proportions into two different taurine cattle breeds of Burkina Faso (Lobi and N’Dama) using 38 microsatellites and various statistical methodologies. West African and East African zebu samples were sequentially used as reference parental populations. Furthermore, N’Dama cattle from Congo, the composite South African Bonsmara cattle breed and a pool of European cattle were used successively as second parental populations. Independently of the methodology applied: (a) the use of West African zebu samples gave higher admixture coefficients than the East African zebu; (b) the higher zebu proportions were estimated when the European cattle was used as parental population 2; and (c) the use of the N’Dama population from Congo as parental population 2 gave the more consistent zebu proportion estimates for both the Lobi and the N’Dama breeds. In any case, the zebu admixture proportions estimated were not negligible and were always higher in the N’Dama cattle than in the Lobi cattle of Burkina Faso. This suggested that the introgression of Sahelian zebu genes into the taurine cattle of Southern West Africa can follow a complex pattern that can depend on local agro-ecological features. The current research pointed out that the estimation of admixture coefficients is highly dependent on both the assumptions underlying the methodologies applied and the selection of parental populations. Our analyses suggest that either too high or nil genetic identity between the parental and the expectedly derived populations must be avoided.
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Toure SM (1997) Trypanotolerance. Review of knowledge. Rev Elev Med Vet Pay 30:157–174
Hanotte O, Ronin Y, Agaba M, Nilsson P, Gelhaus A, Horstmann R, Sugimoto Y, Kemp S, Gibson J (2003) Mapping of quantitative trait loci controlling trypanotolerance in a cross of tolerant West African N’Dama and susceptible East African Boran cattle. PNAS 100:7443–7448
Freeman AR, Meghen CM, Machugh DE, Loftus RT, Achukwi MD, Bado A, Sauveroche B, Bradley DG (2004) Admixture and diversity in West African cattle populations. Mol Ecol 13:3477–3487
Agyemang K (2005) Trypanotolerant livestock in the context of trypanosomiasis intervention strategies. PAAT technical and scientific series 7. Food and Agriculture Organisation of the United Nations, Rome, Italy
Soudré A, Ouédraogo-Koné S, Wurzinger M, Müller S, Hanotte O, Ouédraogo AG, Sölkner J (2013) Trypanosomosis: a priority disease in tsetse-challenged areas of Burkina Faso. Trop Anim Health Prod 45:497–503
MacHugh DE, Shriver MD, Loftus RT, Cunningham P, Bradley DG (1997) Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus). Genetics 146:1071–1086
Dayo GK, Thevenon S, Berthier D, Moazami-Goudrazi K, Denis C, Cuny G, Eggen A, Gautier M (2009) Detection of selection signatures within candidate regions underlying trypanotolerance in outbred cattle populations. Mol Ecol 18:1801–1813
Dayo GK, Gautier M, Berthier D, Poivey JP, Sidibe I, Bengaly Z, Eggen A, Boichard D, Thevenon S (2011) Association studies in QTL regions linked to bovine trypanotolerance in a West African crossbred population. Anim Genet 43:123–132
Álvarez I, Traoré A, Tambourá HH, Kaboré A, Royo LJ, Fernández I, Ouédraogo-Sanou G, Sawadogo L, Goyache F (2009) Microsatellite analysis characterizes Burkina Faso as a genetic contact zone between Sahelian and Djallonké sheep. Anim Biotechnol 20:47–57
Traoré A, Álvarez I, Tambourá HH, Fernández I, Kaboré A, Royo LJ, Gutiérrez JP, Ouédraogo-Sanou G, Sawadogo L, Goyache F (2009) Genetic characterisation of Burkina Faso goats using microsatellite polymorphism. Livest Sci 123:322–328
Achukwi MD, Tanya VN, Hill EW, Bradley DG, Meghen C, Sauveroche B, Banser JT, Ndoki JN (1997) Susceptibility of the Namchi and Kapsiki cattle of Cameroon to trypanosome infection. Trop Anim Health Prod 4:219–226
Orenge CO, Munga L, Kimwele VN, Kemp S, Korol A, Gibson JP, Hanotte O, Soller M (2012) Trypanotolerance in N’Dama x Boran crosses under natural trypanosome challenge: effect of test-year environment, gender, and breed composition. BMC Genetics 13:87 http://www.biomedcentral.com/1471-2156/13/87
Ruane J (1999) A critical review of the value of genetic distance studies in conservation of animal genetic resources. J Anim Breed Genet 116:317–323
Jordana J, Alexandrino P, Beja-Pereira A, Bessa I, Cañon J, Carretero Y, Dunner S, Laloë D, Moazami-Gourdarzi K, Sanchez A, Ferrand N (2003) Genetic structure of eighteen local south European beef cattle breeds by comparative F-statistics analysis. J Anim Breed Genet 120(2):73–87
Mahgoub O, Babiker HA, Kadim IT, Al-Kindi M, Hassan S, Al-Marzooqi W, Eltahir YE, Al-Abri MA, Al-Khayat A, Al-Sinani KR, Al-Khanjari H, Costa V, Chen S, Beja-Pereira A (2012) Disclosing the origin and diversity of Omani cattle. Anim Genet doi: 10.1111/j.1365-2052.2012.02399.x
Ibeagha-Awemu E, Erhardt G (2005) Genetic structure and differentiation of 12 African Bos indicus and Bos taurus cattle breeds, inferred from protein and microsatellite polymorphisms. J Anim Breed Genet 122:12–20
Ndumu DB, Baumung R, Hanotte O, Wurzinger M, Okeyo MA, Jianlin H, Kibogo H, Sölkner J (2008) Genetic and morphological characterisation of the Ankole Longhorn cattle in the African Great Lakes region. Genet Sel Evol 40:467–490
Missohou A, Poutya MR, Nenonene A, Dayo G-K, Ayssiwede SB, Talaki E, Issa Y, Fané A (2011) Genetic diversity and differentiation in nine West African local goat breeds assessed via microsatellite polymorphism. Small Rum Res 99:20–24
Zerabruk M, Li M-H, Kantanen J, Olsaker I, Ibeagha-Awemu EM, Erhardt G, Vangen O (2012) Genetic diversity and admixture of indigenous cattle from North Ethiopia: implications of historical introgressions in the gateway region to Africa. Anim Genet 43:257–266
Dadi H, Tibbo M, Takahashi Y, Nomura K, Hanada H, Amano T (2008) Microsatellite analysis reveals high genetic diversity but low genetic structure in Ethiopian indigenous cattle populations. Anim Genet 39:425–431
Hanotte O, Bradley DG, Ochieng JW, Verjee Y, Hill EW, Rege JE (2002) African pastoralism: genetic imprints of origins and migrations. Science 296:336–339
Traoré A, Álvarez I, Fernández I, Pérez-Pardal L, Kaboré A, Ouédraogo-Sanou GMS, Zaré Y, Tamboura HH, Goyache F (2012) Ascertaining gene flow patterns in livestock populations of developing countries: a case study in Burkina Faso goat. BMC Genet 13:35. doi:10.1186/1471-2156-13-35
Bouyer J, Balenghien T, Ravel S, Vial L, Sidibé I, Thévenon S, Solano P, De Meeûs T (2009) Population sizes and dispersal patterns of tsetse flies: rolling on the river? Mol Ecol 18:2787–2797
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
Bozzi R, Álvarez I, Crovetti A, Fernández I, De Petris D, Goyache F (2012) Assessing priorities for conservation in Tuscan cattle breeds using microsatellites. Animal 6:203–211
Gutiérrez JP, Royo LJ, Álvarez I, Goyache F (2005) MolKin v2.0: a computer program for genetic analysis of populations using molecular coancestry information. J Hered 96:718–721
Caballero A, Toro MA (2002) Analysis of genetic diversity for the management of conserved subdivided populations. Conserv Genet 3:289–299
Álvarez I, Gutiérrez JP, Royo LJ, Fernández I, Gómez E, Arranz JJ, Goyache F (2005) Testing the usefulness of the molecular coancestry information to assess genetic relationships on livestock using a set of Spanish sheep breeds. J Anim Sci 83:737–744
Eding H, Meuwissen THE (2001) Marker-based estimates of between and within population kinships for the conservation of genetic diversity. J Anim Breed Genet 118:141–159
Eding H, Crooijmans RPMA, Groenen MAM, Meuwissen THE (2002) Assessing the contribution of breeds to genetic diversity in conservation schemes. Genet Sel Evol 34:613–633
Simianer H (2002) Molekulargenetische Differenzierung verschiedener Rotviehpopulationen. Schriftenreihe des Bundesministeriums für Verbraucherschutz, Ernährung und Landwirtschaft. Heft 493. Landwirtschaftsverlag GmbH. Münster-Hiltrup, Germany
Baumung R, Cubric-Curik V, Schwend K, Achmann R, Sölkner J (2006) Genetic characterisation and breed assignment in Austrian sheep breeds using microsatellite marker information. J Anim Breed Genet 123:265–271
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959
Beaumont M, Barret EM, Gotelli D, Kitchener AC, Daniels J, Pritchard J (2001) Genetic diversity and introgression in the Scottish wildcat. Mol Ecol 10:319–336
Kumar P, Freeman AR, Loftus RT, Gaillard C, Fuller DQ, Bradley DG (2003) Admixture analysis of South Asian cattle. Heredity 91:43–50
Wang J (2003) Maximum-likelihood estimation of admixture proportions from genetic data. Genetics 164:747–765
Chikhi L, Bruford MW, Beaumont MA (2001) Estimation of admixture proportions: a likelihood-based approach using Markov chain Monte Carlo. Genetics 158:1347–1362
Bray TC, Chikhi L, Sheppy AJ, Bruford MW (2009) The population genetic effects of ancestry and admixture in a subdivided cattle breed. Anim Genet 40:393–400
Ibeagha-Awemu E, Jann O, Weimann C, Erhardt G (2004) Genetic diversity, introgression and relationships among West/Central African cattle breeds. Genet Sel Evol 36:673–690
Itard J, Cuisance D (2003) Vecteurs cycliques des trypanosomoses. In: Lefèvre PC, editor. Principales Maladies Infectieuses et Parasitaires du Bétail. Europe et Régions Chaudes. Lavoisier, pp 139–165
Pérez-Pardal L, Royo LJ, Beja-Pereira A, Chen S, Cantet RJC, Traoré A, Curik I, Sölkner J, Bozzi R, Fernández I, Álvarez I, Gutiérrez JP, Gómez E, Ponce de León FA, Goyache F (2010) Multiple paternal origins of domestic cattle revealed by Y-specific interspersed multilocus microsatellites. Heredity 105:511–519
Bertorelle G, Excoffier L (1998) Inferring admixture proportions from molecular data. Mol Biol Evol 15:1298–1311
Dupanloup I, Bertorelle G (2001) Inferring admixture proportions from molecular data: extension to any number of parental populations. Mol Biol Evol 18:672–675
Acknowledgments
This paper was partially funded by grants from CORAF/WECARD-World Bank no. 03/GRN/16 and from MICIN-FEDER No. AGL2011-27585. No ethics statement was required for the collection of DNA samples. DNA was extracted from blood samples obtained from different veterinary practitioners visiting farms with the permission of the owners.
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Álvarez, I., Traoré, A., Fernández, I. et al. Assessing introgression of Sahelian zebu genes into native Bos taurus breeds in Burkina Faso. Mol Biol Rep 41, 3745–3754 (2014). https://doi.org/10.1007/s11033-014-3239-x
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DOI: https://doi.org/10.1007/s11033-014-3239-x