Skip to main content

Advertisement

Log in

Increased rice yield in long-term crop rotation regimes through improved soil structure, rhizosphere microbial communities, and nutrient bioavailability in paddy soil

  • Original Paper
  • Published:
Biology and Fertility of Soils Aims and scope Submit manuscript

Abstract

Soil in short-term crop rotation systems (STCR) is still in the initial development stage of farmland soil, whereas after long-term crop rotation treatment (LTCR), soil properties are significantly different. This study compares STCR (4 years) and LTCR (30 years) rice-rice-fallow, rice-rice-rape rotation practices under the same soil type background and management system. To reveal ecosystem mechanisms within soils and their effects on rice yield following LTCR, we analyzed the physical, chemical, and microbiological properties of soils with different rotations and rotation times. Relative to STCR, LTCR significantly reduced soil water-stable aggregate (WSA) content in the < 0.053-mm range, while > 2 mm WSA content significantly increased. Soil organic matter increased in fields under LTCR, mainly in > 2 mm, 2–0.25 mm, and < 0.053 mm soil WSA in 0–10 cm soil layer. LTCR was associated with significantly increased total soil organic matter, at the same time being associated with increasing the amount of active organic matter in the 0–20 cm soil layer. The two crop rotation regimes significantly differed in soil aggregate composition as well as in soil N and P, microbial biomass, and community composition. Relative to STCR, LTCR field soils had significantly higher soil organic matter, active organic matter content, soil enzyme activities, and overall microbial biomass, while soil WSA and microbial community composition was significantly different. Our results demonstrate that LTCR could significantly improve soil quality and rice yield and suggest that length of rotation time and rice-rice-rape rotation are critical factors for the development of green agriculture.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8

Similar content being viewed by others

References

  • Angers DA, Caron J (1998) Plant-induced changes in soil structure: processes and feedbacks. Biogeochemistry 42:55–72

    Article  Google Scholar 

  • Atere CT, Ge TD, Zhu ZK, Tong CL, Jones DL, Shibistova O, Guggenberger G, Wu JS (2017) Rice rhizodeposition and carbon stabilisation in paddy soil are regulated via drying-rewetting cycles and nitrogen fertilization. Biol Fertil Soils 53(4):407–417

    Article  CAS  Google Scholar 

  • Barea JM, Azcon R, Azcon-Aguilar C (2002) Mycorrhizosphere interactions to improve plant fitness and soil quality. A Van Leeuw 81:343–351

    Article  CAS  Google Scholar 

  • Bastida F, Kandeler E, Hernandez T, Garcia C (2008) Long-term effect of municipal solid waste amendment on microbial abundance and humus-associated enzyme activities under semiarid conditions. Microb Ecol 55:651–661

    Article  Google Scholar 

  • Briar SS, Fonte SJ, Park I, Six J, Scow K, Ferris H (2011) The distribution of nematodes and soil microbial communities across soil aggregate fractions and farm management systems. Soil Biol Biochem 43:905–914

    Article  CAS  Google Scholar 

  • Bronick CJ, Lal R (2005) Soil structure and management: a review. Geoderma 124:3–22

    Article  CAS  Google Scholar 

  • Brookes PC, Powlson DS, Jenkinson SD (1982) Measurement of microbial biomass phosphorous in soil. Soil Biol Biochem 14:319–329

    Article  CAS  Google Scholar 

  • Campbell CA, Selles F, Lafond GP, Biederbeck VO, Zenter RP (2001) Tillage-fertilizer changes: effect on some soil quality attributes under long-term crop rotations in a thin black chernozem. Can J Soil Sci 81:157–165

    Article  Google Scholar 

  • CRRI, Vision Document 2030 (2011) Central Rice Research Institute, Indian Council of Agricultural Research, Cuttack, Odhisa, 753, 006

  • De Datta SK (1981) Principles and practices of Rice production. John Wiley & Sons, New York, pp 91–93

    Google Scholar 

  • Elliott ET, Cambardella CA (1991) Physical separation of soil organic matter. Agric Ecosyst Environ 34:407–419

    Article  Google Scholar 

  • Falconer IR (1999) An overview of problems caused by toxic blue–green algae (cyanobacteria) in drinking and recreational water. Environ Toxicol 14:5–12

    Article  CAS  Google Scholar 

  • Fu QL, Liu C, Ding NF, Lin YC, Guo B, Luo JF, Wang HL (2012) Soil microbial communities and enzyme activities in a reclaimed coastal soil chrono sequence under rice–barley cropping. J Soils Sediments 12:1134–1144

    Article  CAS  Google Scholar 

  • Gao JS, Xu MG, Dong CH, Huang J, Cao WD, Zeng XB, Wen SL, Nie J (2013) Effects of long-term rice-rice-green manure cropping rotation on rice yield and soil fertility. Acta Agron Sin 39:343

    Article  CAS  Google Scholar 

  • Gestel MV, Merckx R, Vlassak K (1996) Spatial distribution of microbial biomass in microaggregates of a silty-loam soil and their relation with the resistance of microorganisms to soil drying. Soil Biol Biochem 28:503–509

    Article  Google Scholar 

  • Gil-Sotres F, Trasar-Cepeda C, Leiros MC, Seoane S (2005) Different approaches to evaluate soil quality using biochemical properties. Soil Biol Biochem 37:877–887

    Article  CAS  Google Scholar 

  • Gregersen LH, Bryant DA, Frigaard NU (2011) Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria. Front Microbiol 2:100–116

    Article  CAS  Google Scholar 

  • Gregorich EG, Carter MR, Angers DA, Monreal CM, Ellert BH (1994) Towards a minimum data set to assess soil organic matter quality in agricultural soils. Can J Soil Sci 74:367–385

    Article  CAS  Google Scholar 

  • Huang GQ, Xiong YM, Qian HY, Wang SB, Liu LW, Zhao QG (2006) Ecological analysis on crop rotation systems of paddy field. Acta Ecol Sin 26(4):1159–1164

    Article  CAS  Google Scholar 

  • Jastrow JD, Miller RM (1997) Soil aggregate stabilization and carbon sequestration: feedbacks through organomineral associations. In: Columbus OH (ed) Soil processes and the carbon cycle. CRC Press, Boca Raton, pp 207–223

    Google Scholar 

  • Jiang MB, Wang XH, Yun H, Liu S, Chao H, Zhao CY, Hua L (2017) Variation of soil aggregation and intra-aggregate carbon by long-term fertilization with aggregate formation in a grey desert soil. Catena 149:437–445

    Article  CAS  Google Scholar 

  • Jozefaciuk G, Czachor H (2014) Impact of organic matter, iron oxides, alumina, silica and drying on mechanical and water stability of artificial soil aggregates. Assessment of new method to study water stability. Geoderma 221-222:1–10

    Article  CAS  Google Scholar 

  • Kodesova R, Rohoskova M, Zigova A (2009) Comparison of aggregate stability within six soil profiles under conventional tillage using various laboratory tests. Biologia 64:550–554

    Article  Google Scholar 

  • Ling N, Sun YM, Ma JH, Guo JJ, Zhu P, Peng C, Yu GH, Ran W, Guo SW, Shen QR (2014) Response of the bacterial diversity and soil enzyme activity in particle-size fractions of Mollisol after different fertilization in a long-term experiment. Biol Fertil Soils 50:901–911

    Article  CAS  Google Scholar 

  • Logninow W, Wisniewski W, Gonet SS, Ciescinska B (1987) Fractionation of organic carbon based on susceptibility to oxidation. Polish J Soil Sci 20:47–52

    Google Scholar 

  • Marschner P, Baumann K (2003) Changes in bacterial community structure induced by mycorrhizal colonization in split-root maize. Plant Soil 251:279–289

    Article  CAS  Google Scholar 

  • Mengual C, Schoebitz M, Caravaca F, Roldán A (2016) Assessment of the potential role of Streptomyces strains in the revegetation of semiarid sites: the relative incidence of strain origin and plantation site on plant performance and soil quality indicators. Biol Fertil Soils 52:53–64

    Article  CAS  Google Scholar 

  • Mizuta K, Taguchi S, Sato S (2015) Soil aggregate formation and stability induced by starch and cellulose. Soil Biol Biochem 87:90–96

    Article  CAS  Google Scholar 

  • Nannipieri P, Giagnoni L, Landi L, Renella G (2011) Role of phosphatase enzymes in soil. In: Bunemann EK, Oberson A, Frossard E (eds) Phosphorus in action. Soil Biology. Springer Verlag, Berlin Heidelberg, pp 215–241

    Chapter  Google Scholar 

  • Nannipieri P, Trasar-Cepeda C, Dick RP (2018) Soil enzyme activity: a brief history and biochemistry as a basis for appropriate interpretations and meta-analysis. Biol Fertil Soils 54(1):11–19

    Article  CAS  Google Scholar 

  • Nayak AK, Gangwar B, Shukla AK, Mazumdar PS, Kumar A, Raja R, Kumar A, Kumar V, Rai PK, Mohan U (2012) Long-term effect of different integrated nutrient management on soil organic carbon and its fractions and sustainability of rice-wheat system in Indo Gangetic Plains of India. Field Crop Res 127:129–139

    Article  Google Scholar 

  • Ortas T (2012) Mycorrhiza in citrus: growth and nutrition. Springer: 333–351

  • Panesar BS, Fluck RC (1993) Energy productivity of a production system: analysis and measurement. Agric Syst 43:415–437

    Article  Google Scholar 

  • Podosokorskaya OA, Kadnikov VA, Gavrilov SN, Mardanov AV, Karnachuk OV, Ravin NA (2013) Characterization of Melioribacterroseus gen. nov., sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the class Ignavibacteria, and a proposal of a novel bacterial phylum Ignavibacteriae. Environ Microbiol 15:1759–1771

    Article  CAS  Google Scholar 

  • Rabus R, Gade D, Helbig R, Bauer M, Glockner FO, Kube M, Schlesner H, Reinhardt R, Amann R (2002) Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approach. Proteomics 2:649–655

    Article  CAS  Google Scholar 

  • Regelink IC, Stoof CR, Roueeeva S, Weng LP, Lair GJ, Kram P, Nikolaidis NP, Kercheva M, Banwart S, Comans RNJ (2015) Linkages between aggregate formation, porosity and soil chemical properties. Geoderma 247:24–37

    Article  CAS  Google Scholar 

  • Saha D, Kukal SS, Sharma S (2011) Land use impacts on SOC fractions and aggregate stability in typic ustochrepts of Northwest India. Plant Soil 339:457–470

    Article  CAS  Google Scholar 

  • Schinner F, Von Mersi W (1990) Xylanase-, CM-cellulase- and invertase activity in soil: an improved method. Soil Biol Biochem 22:511–515

    Article  CAS  Google Scholar 

  • Schloter M, Nannipieri P, Sørensen SJ, Elsas JDV (2018) Microbial indicators for soil quality. Biol Fertil Soils 54:1–10

    Article  CAS  Google Scholar 

  • Schöler A, Jacquiod S, Vestergaard G, Schulz S, Schloter M (2017) Analysis of soil microbial communities based on amplicon sequencing of marker genes. Biol Fertil Soils 53:485–489

    Article  CAS  Google Scholar 

  • Simansky V, Tobiasova E, Chlpik J (2008) Soil tillage and fertilization of Orthic Luvisol and their influence on chemical properties, soil structure stability and carbon distribution in water-stable macro-aggregates. Soil Tillage Res 100:125–132

    Article  Google Scholar 

  • Sinsabaugh RL, Lauber CL, Weintraub MN, Ahmed B, Allison SD, Crenshaw C, Contosta AR, Causack D, Frey S, Gallo ME, Gartner TB, Hobbie SE, Holland K, Keeler BL, Powers JS, Stursova M, Takacs-Vesbach C, Wallenstein MD, Zak DR, Zeglin LH (2008) Stoichiometry of soil enzyme activity at global scale. Ecol Lett 11:1252–1264

    Article  Google Scholar 

  • Sinsabaugh RL, Hill BH, Follstad Shah JJ (2009) Ecoenzymatic stoichiometry of microbial organic nutrient acquisition in soil and sediment. Nature 462:795–798

    Article  CAS  Google Scholar 

  • Six J, Bossuyt H, Degryze S, Denef K (2004) A history of research on the link between (micro) aggregates, soil biota, and soil organic matter dynamics. Soil Tillage Res 79:7–31

    Article  Google Scholar 

  • Smithson PC, Giller KE (2002) Appropriate farm management practices for alleviating N and P deficiencies in low-nutrient soils of the tropics. Plant Soil 245:169–180

    Article  CAS  Google Scholar 

  • Sposito G, Skipper NT, Sutton R, Park SH, Soper AK, Greathouse JA (1999) Surface geochemistry of the clay minerals. Proc Natl Acad Sci 96:3358–3364

    Article  CAS  Google Scholar 

  • Stepniewska Z, Wolinska A, Ziomek J (2009) Response of soil catalase activity to chromium contamination. J Environ Sci 21:1142–1147

    Article  CAS  Google Scholar 

  • Strous M, Fuerst JA, Kramer EVM, Logemann S, Muyzer G, Van de Pas-Schoonen KT, Webb R, Kuenen JG, Jetten MSM (1999) Missing lithotroph identified as new Planctomycete. Nature 400:446–449

    Article  CAS  Google Scholar 

  • Su W, Lu J, Wang W, Li X, Ren T, Cong R (2014) Influence of rice straw mulching on seed yield and nitrogen use efficiency of winter oilseed rape (Brassica napus L.) in intensive rice–oilseed rape cropping system. Field Crop Res 159:53–61

    Article  Google Scholar 

  • Tessier JT, Raynal DJ (2003) Use of nitrogen to phosphorus ratios in plant tissue as an indicator of nutrient limitation and nitrogen saturation. J Appl Ecol 40:523–534

    Article  CAS  Google Scholar 

  • Tian J, Lou YL, Gao Y, Fang HJ, Liu ST, Xu MG, Blagodatskaya E, Kuzyakov Y (2017) Response of soil organic matter fractions and composition of microbial community to long-term organic and mineral fertilization. Biol Fertil Soils 53:523–532

    Article  CAS  Google Scholar 

  • Triberti L, Nastri A, Baldoni G (2016) Long-term effects of crop rotation, manure and mineral fertilisationon carbon sequestration and soil fertility. Eur J Agron 74:47–55

    Article  CAS  Google Scholar 

  • Uhlířová E, Šimek M, Šantrůčková H (2005) Microbial transformation of organic matter in soils of montane grasslands under different management. Appl Soil Ecol 28:225–235

    Article  Google Scholar 

  • Vance ED, Brookes PC, Jenkinson DS (1987) An extraction method for measuring soil microbial biomass C. Soil Biol Biochem 19:703–707

    Article  CAS  Google Scholar 

  • Vestergaard G, Schulz S, Schöler A, Schloter M (2017) Making big data smart-how to use metagenomics to understand soil quality. Biol Fertil Soils 53:479–484

    Article  Google Scholar 

  • Vieira FCB, Bayer C, Zanatta JA, Dieckow J, Mielniczuk J, He ZL (2007) Carbon management index based on physical fractionation of soil organic matter in an acrisol under long-term no-till cropping systems. Soil Tillage Res 96:195–204

    Article  Google Scholar 

  • Voorde TFJVD, Putten WHVD, Bezemer TM (2011) Intra-and interspecific plant-soil interactions, soil legacies and priority effects during old-field succession. J Ecol 99:945–953

    Article  Google Scholar 

  • Wang MY, Xia RX, Wu QS, Liu JH, Hu LM (2007) Influence of arbuscular mycorrhizal fungi on microbes and enzymes of soils from different cultivated densities of red clover. Ann Microbiol 57:1–7

    Article  CAS  Google Scholar 

  • Wang S, Liang X, Chen Y, Luo Q, Liang W, Li S, Huang C, Li Z, Wan L, Li W, Shao X (2012) Phosphorus loss potential and phosphatase activity under phosphorus fertilization in long-term paddy wetland agroecosystems. Soil Sci Soc Am J 76:161–167

    Article  CAS  Google Scholar 

  • Whithread AM, Lefroy RDB, Blair GJ (1998) A survey of the impact of cropping on soil physical and chemical properties in North-Western New South Wales. Austr J Soil Res 36:669–681

    Article  Google Scholar 

  • Wickings K, Grandy AS, Reed SC, Cleveland CC (2012) The origin of litter chemical complexity during decomposition. Ecol Lett 15:1180–1188

    Article  Google Scholar 

  • Ye SP, Yang YJ, Xin GR, Wang YT, Ruan L, Ye GG (2015) Studies of the Italian ryegrass–rice rotation system in southern China: arbuscular mycorrhizal symbiosis affects soil microorganisms and enzyme activities in the Loliummutiflorum L. rhizosphere. Appl Soil Ecol 90:26–34

    Article  Google Scholar 

  • Zhang H, Sekiguchi Y, Hanada S, Hugenholtz P, Kim H, Kamagata Y, Nakamura K (2003) Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. Int J Syst Evol Microbiol 53:1155–1163

    Article  CAS  Google Scholar 

  • Zhang HS, Wu XH, Li G, Qin P (2011) Interactions between arbuscular mycorrhizal fungi and phosphate-solubilizing fungus (Mortierella sp.) and their effects on Kostelelzkya virginica growth and enzyme activities of rhizosphere and bulk soils at different salinities. Biol Fertil Soils 47(5):543–554

    Article  CAS  Google Scholar 

  • Zheng SX, Hu JL, Chen K, Yao J, Yu ZN, Lin XG (2009) Soil microbial activity measured by microcalorimetry in response to long-term fertilization regimes and available phosphorous on heat evolution. Soil Biol Biochem 41:2094–2099

    Article  CAS  Google Scholar 

  • Zhong WH, Cai ZC (2007) Long-term effects of inorganic fertilizers on microbial biomass and community functional diversity in a paddy soil derived from quaternary red clay. Appl Soil Ecol 36:84–91

    Article  Google Scholar 

Download references

Acknowledgements

This study was supported in part by the National Key R&D Program of China (2017YFD0200100, 2017YFD0200104), National Natural Science Foundation of China (Grant No. 31101596, 31372130), Hunan Provincial Recruitment Program of Foreign Experts, and the National Oilseed Rape Production Technology System of China, “2011 Plan” supported by The Chinese Ministry of Education.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Zhen-Hua Zhang.

Electronic supplementary material

ESM 1

(DOCX 284 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Lu, S., Lepo, J.E., Song, HX. et al. Increased rice yield in long-term crop rotation regimes through improved soil structure, rhizosphere microbial communities, and nutrient bioavailability in paddy soil. Biol Fertil Soils 54, 909–923 (2018). https://doi.org/10.1007/s00374-018-1315-4

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00374-018-1315-4

Keywords

Navigation