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Analysis of the chromosome 2(2H) region of barley associated with the correlated traits Fusarium head blight resistance and heading date

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Abstract

Fusarium head blight (FHB) is a major disease of barley (Hordeum vulgare L.) that results in reduced grain yield and quality through the accumulation of the mycotoxin deoxynivalenol (DON). Coincident QTL for FHB severity, DON concentration, and heading date (HD) map to a region of chromosome 2(2H) designated Qrgz-2H-8. It is unclear whether disease resistance at this locus is due to a pleiotropic effect of late HD by delaying the host exposure to the pathogen or a tightly linked resistance gene. The objectives of this study were to develop a set of near isogenic lines (NILs) for the Qrgz-2H-8 region and to genetically dissect the QTL region containing the coincident traits. Two NIL populations were developed consisting of F2- and F4-derived recombinants from a cross between a BC5 line carrying the donor parent (Chevron) alleles in the Qrgz-2H-8 region and the recurrent parent M69. Analysis of field and marker data from these NILs revealed that the Chevron alleles conditioning FHB resistance, late HD, and low DON concentration were successfully introgressed into the BC5 parent line and were segregating among NILs. QTL analysis of the F4-derived population showed that the HD QTL is adjacent to the FHB QTL. Furthermore, a single NIL was identified that was similar to the resistant BC5 parent for FHB severity and the early flowering parent M69 for HD. These results indicate that the relationship between FHB and HD at the Qrgz-2H-8 region is likely due to tight linkage rather than pleiotropy.

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References

  • Alpert KB, Tanksley SD (1996) High-resolution mapping and isolation of a yeast artificial chromosome contig containing fw2.2: a major fruit-weight quantitative locus in tomato. Proc Natl Acad Sci USA 93:15503–15507

    Article  PubMed  CAS  Google Scholar 

  • Bassam BJ, Caetano-Anolles G, Gresshoff PM (1991) Fast and selective silver staining of DNA in polyacrylamide gels. Anal Biochem 196:80–83

    Article  PubMed  CAS  Google Scholar 

  • Beavis WD (1998) QTL analyses: power, precision and accuracy. In: Paterson AH (ed) Molecular analysis of complex traits. CRC, Boca Raton, FL, pp 145–161

    Google Scholar 

  • Brouwer DJ, St. Clair DA (2004) Fine mapping of three quantitative trait loci for late blight resistance in tomato using near isogenic lines (NILs) and sub-NILs. Theor Appl Genet 108:628–638

    Article  PubMed  CAS  Google Scholar 

  • Canci PC, Nduulu LM, Muehlbauer GJ, Dill-Macky R, Rasmusson DC, Smith KP (2004) Validation of quantitative trait loci for Fusarium head blight and kernel discoloration in barley. Mol Breed 14:91–104

    Article  CAS  Google Scholar 

  • Chaib J, Lecomte L, Buret M, Cause M (2006) Stability over genetic backgrounds, generations and years of quantitative trait locus (QTLs) for organoleptic quality in tomato. Theor Appl Genet 112:934–944

    Article  PubMed  CAS  Google Scholar 

  • Dahleen LS, Agrama HA, Horsley RD, Steffenson BJ, Schwarz PB, Mesfin A, Franckowiak JD (2003) Identification of QTLs associated with Fusarium head blight resistance in Zhedar 2 barley. Theor Appl Genet 108:95–104

    Article  PubMed  CAS  Google Scholar 

  • de la Peña RC, Smith KP, Capettini F, Muehlbauer GJ, Gallo-Meagher M, Dill-Macky R, Somers DA, Rasmusson DC (1999) Quantitative trait loci associated with resistance to Fusarium head blight and kernel discoloration in barley. Theor Appl Genet 99:561–569

    Article  Google Scholar 

  • de la Peña RC, Murray TD, Jones SS (1996) Linkage relationships among eyespot resistance gene Pch2, endopeptidase Ep-A1b, and RFLP marker Xpsr121 on chromosome 7 A of wheat. Plant Breed 115:273–275

    Article  Google Scholar 

  • Edwards K, Johnstone C, Thompson C (1991) A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nuc Acids Res 19:1349

    Article  CAS  Google Scholar 

  • Fasoula VA, Harris DK, Boerma HR (2004) Validation and designation of quantitative trait loci for seed protein, seed oil, and seed weight from two soybean populations. Crop Sci 44:1218–1225

    Article  CAS  Google Scholar 

  • Frary A, Doganlar S, Frampton A, Fulton T, Uhlig J, Yates H, Tanksley SD (2003) Fine mapping of quantitative trait loci for improved fruit characteristics from Lycopersicon chmielewskii chromosome 1. Genome 46:235–243

    Article  PubMed  CAS  Google Scholar 

  • Gao W, Clancy JA, Han F, Jones BL, Budde A, Wesenberg DM, Kleinhofs A, Ullrich SE (2004) Fine mapping of malting-quality QTL complex near the chromosome 4HS telomere in barley. Theor Appl Genet 109:750–760

    Article  PubMed  CAS  Google Scholar 

  • Glover KD, Wang D, Arelli PR, Carlson SR, Cianzio SR, Diers BW (2004) Near isogenic lines confirm a soybean cyst nematode resistance gene from PI 88788 on linkage group J. Crop Sci 44:936–941

    Article  Google Scholar 

  • Han F, Ullrich SE, Kleinhofs A, Jones BL, Hayes PM, Wesenberg DM (1997) Fine structure mapping of the barley chromosome-1 centromere region containing malting-quality QTLs. Theor Appl Genet 95:903–910

    Article  CAS  Google Scholar 

  • Holland JB (2004) New directions for a diverse planet. In: Proceedings for the 4th International Crop Science Congress, Brisbane, Australia, 26 September–1 October 2004

  • Horsley RD, Schmierer D, Maier C, Kudrna D, Urrea CA, Steffenson BJ, Schwarz PB, Franckowiak JD, Green MJ, Zhang B, Kleinhofs A (2006) Identification of QTL associated with Fusarium head blight resistance in barley accession CIho 4196. Crop Sci 46:145–156

    Article  CAS  Google Scholar 

  • Liu S, Zhang X, Pumphrey MO, Stack RW, Gill BS, Anderson JA (2006) Complex microcolinearity among wheat, rice, and barley revealed by fine mapping of the genomic region harboring a major QTL for resistance to Fusarium head blight in wheat. Functional and Integrative Genomics 6:83–89

    Article  PubMed  CAS  Google Scholar 

  • Ma Z, Steffenson BJ, Prom LK, Lapitan NLV (2000) Mapping of quantitative trait loci for Fusarium head blight resistance in barley. Phytopathology 90:1079–1088

    Article  CAS  PubMed  Google Scholar 

  • McMullen MP, Jones R, Wallenberg D (1997) Scab of wheat and barley: a re-emerging disease of devastating impact. Plant Dis 81:1340–1348

    Article  Google Scholar 

  • Meksem K, Doubler TW, Chancharoenchai K, Njiti VN, Chang SJC, Rao-Arelli AP, Cregan PE, Gray LE, Gibson PT, Lightfoot DA (1999) Clustering among loci underlying soybean resistance to Fusarium solani, SDS and SCN in near-isogenic lines. Theor Appl Genet 99:1131–1142

    Article  CAS  Google Scholar 

  • Mesfin A, Smith KP, Dill-Macky R, Evans KC, Waugh R, Gustus CD, Muehlbauer GJ (2003) Quantitative trait loci for Fusarium head blight resistance in barley detected in a two-rowed by six-rowed population. Crop Sci 43:307–318

    Article  CAS  Google Scholar 

  • Mirocha CJ, Kolaczkowski E, Xie W, Yu H, Jelen H (1998) Analysis of deoxynivalenol and its derivatives (batch and single kernel) using gas chromatography/mass spectrometry. J Agric Food Chem 46:1414–1418

    Article  CAS  Google Scholar 

  • Nganje WE., Johnson DD, Wilson WW, Leistritz FL, Bangsund DA, Tiapo NM ( 2001) Economic impacts of Fusarium head blight in wheat and barley:1998–2000. Agribusiness and Applied Economics Report No. 464. North Dakota State University, Fargo, ND

  • Nichols DM, Glover KD, Carlson SR, Specht JE, Diers BW (2006) Fine mapping of seed protein QTL on soybean linkage group I and its correlated effects on agronomic traits. Crop Sci 46:834–839

    Article  Google Scholar 

  • Paterson AH, DeVerna JW, Lanini B, Tanksley SD (1990) Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes, in an interspecies cross of tomato. Genetics 124:735–742

    PubMed  CAS  Google Scholar 

  • Rafalski JA (2002) Novel genetic mapping tools in plants: SNPs and LD-based approaches. Plant Sci 162:329–333

    Article  CAS  Google Scholar 

  • Ramsay L, Macaulay M, degli Ivanissevich S, MacLean K, Cardle L, Fuller J, Edwards KJ, Tuvesson S, Morgante M, Massari A, Maestri E, Marmiroli N, Sjakste T, Ganal M, Powell W, Waugh R (2000) A simple sequence repeat-based linkage map of barley. Genetics 156:1997–2005

    PubMed  CAS  Google Scholar 

  • Rostoks N, Ramsay L, MacKenzie K, Cardle L, Bhat PR, Roose ML, Svensson JT, Stein N, Varshney RK, Marshall DF, Graner A, Close TJ, Waugh R (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proc Natl Acad Sci USA 103:18656–18661

    Article  PubMed  CAS  Google Scholar 

  • SAS Institute (2000) The SAS system for windows, Version 8.2. SAS Inst., Cary, NC

    Google Scholar 

  • Schwartz PB (2003) Impact of Fusarium head blight on malting and brewing quality of barley. In: Leaonard KJ, Bushell WR (eds) Fusarium head blight of wheat and barley. APS, St. Paul, pp 395–419

    Google Scholar 

  • Steffenson BJ (2003) Fusarium head blight of barley: impact, epidemics, management, and strategies for identifying and utilizing genetic resistance. In: Leonard KJ, Bushnell WR (eds) American Phytopathological Society, St. Paul

  • Thiel T, Michalek W, Varshney RK, Graner A (2003) Exploiting EST databases for the development of cDNA derived microsatellite markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411–422

    PubMed  CAS  Google Scholar 

  • Van Ooijen JW, Voorrips RE (2001) Joinmap 3.0. Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands

    Google Scholar 

  • Varshney RK, Marcel TC, Ramsay L, Russell J, Röder MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theor Appl Genet 114:1091–1103

    Article  PubMed  CAS  Google Scholar 

  • Wenzl P, Li H, Carling J, Zhou M, Raman H, Edie E, Hearnden P, Maier C, Xia L, Caig V, Ovesna J, Cakir M, Poulsen D, Wang J, Raman R, Smith KP, Muehlbauer GJ, Chalmers KJ, Kleinhofs A, Huttner E, Kilian A (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC Genomics 7:206

    Article  PubMed  CAS  Google Scholar 

  • Windels CE (2000) Economics and social impacts of Fusarium head blight: changing farms and rural communities in the northern Great Plains. Phytopathology 90:17–21

    Article  CAS  PubMed  Google Scholar 

  • Yamamoto T, Kuboki Y, Lin SY, Sasaki T, Yano M (1998) Fine mapping of quantitative trait loci Hd-1, Hd-2 and Hd-3, controlling heading date of rice, as single Mendelian factors. Theor Appl Genet 97:37–44

    Article  CAS  Google Scholar 

  • Zhu HL, Gilchrist L, Hayes P, Kleinhofs A, Kudrna D, Liu Z, Prom L, Steffenson B, Toojinda T, Vivar H (1999) Does function follow form? Principal QTLs for Fusarium head blight (FHB) resistance are coincident with QTLs for inflorescence traits and plant height in double-haploid population of barley. Theor Appl Genet 99:1221–1232

    Article  CAS  Google Scholar 

Download references

Acknowledgments

We thank Ed Schiefelbein, Guillermo Velasquez, Charlie Gustus, Ruth Dill-Macky, Amar Elkkad, Karen Wennberg, Shane Heinen, Charla Hollingsworth, and Galen Thompson for technical assistance. We also thank Dr. Bingxin Zhang for establishing the FHB nursery at Zhejiang University in Hangzhou, China. This material is based upon work supported by the U.S. Department of Agriculture, under Agreement No.59-0790-4-120. This is a cooperative project with the U.S. Wheat & Barley Scab Initiative. Any opinions, findings, conclusions, or recommendations expressed in this publication are those of the authors and do not necessarily reflect the view of the U.S. Department of Agriculture. Partial support was also received from the U.S. Barley Genome Project. Additionally, we thank the University of Minnesota Super Computing Center for providing access to the software JoinMap.

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Correspondence to K. P. Smith.

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Communicated by F. Ordon.

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Nduulu, L.M., Mesfin, A., Muehlbauer, G.J. et al. Analysis of the chromosome 2(2H) region of barley associated with the correlated traits Fusarium head blight resistance and heading date. Theor Appl Genet 115, 561–570 (2007). https://doi.org/10.1007/s00122-007-0590-5

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