Skip to main content
Log in

Bacterial flora of fishes: A review

  • Published:
Microbial Ecology Aims and scope Submit manuscript

Abstract

Bacterial floras isolated from eggs, skin, gills, and intestines have been described for a limited number of fish species. Generally, the range of bacterial genera isolated is related to the aquatic habitat of the fish and varies with factors such as the salinity of the habitat and the bacterial load in the water. In many investigations, identification of isolates to the genus level only makes it difficult to determine the precise relationships of aquatic and fish microfloras. Bacteria recovered from the skin and gills may be transient rather than resident on the fish surfaces. Microfloras of fish intestines appear to vary with the complexity of the fish digestive system. The genera present in the gut generally seem to be those from the environment or diet which can survive and multiply in the intestinal tract, although there is evidence for a distinct intestinal microflora in some species. While obligate anaerobes have been recovered from carp and tilapia intestines, low ambient temperatures may prevent colonization by anaerobes in species such as rainbow trout.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  1. Allen DA, Austin B, Colwell RR (1983) Numerical taxonomy of bacterial isolates associated with a freshwater fishery. J Gen Microbiol 129:2043–2062

    Google Scholar 

  2. Austin B (1982) Taxonomy of bacteria isolated from a coastal, marine fish-rearing unit. J Appl Bacteriol 53:253–268

    Google Scholar 

  3. Austin B (1983) Bacterial microflora associated with a coastal, marine fish-rearing unit. J Mar Biol Ass UK 63:585–592

    Google Scholar 

  4. Austin B (1985) Antibiotic pollution from fish farms: Effects on aquatic microflora. Microbiol Sci 2:113–117

    PubMed  Google Scholar 

  5. Austin B, Allen-Austin D (1985) A review: Bacterial pathogens of fish. J Appl Bacteriol 58:483–506

    PubMed  Google Scholar 

  6. Austin B, Al-Zahrani AMJ (1988) The effect of antimicrobial compounds on the gastrointestinal microflora of rainbow trout,Salmo gairdneri Richardson. J Fish Biol 33:1–14

    Google Scholar 

  7. Austin B, Austin DA (1987) Bacterial fish pathogens: Disease in farmed and wild fish. Ellis Horwood, Ltd, Chichester

    Google Scholar 

  8. Austin B, McIntosh D (1988) Natural antibacterial compounds on the surface of rainbow trout,Salmo gairdneri Richardson. J Fish Dis 11:275–277

    Google Scholar 

  9. Bell GR, Hoskins GE, Hodgkiss W (1971) Aspects of the characterization, identification, and ecology of the bacterial flora associated with the surface of stream-incubating Pacific salmon (Oncorhynchus) eggs. J Fisheries Res Board of Canada 28:1511–1525

    Google Scholar 

  10. Buras N, Duek L, Niv S (1985) Reactions of fish to microorganisms in wastewater. Appl Environ Microbiol 50:989–995.

    PubMed  Google Scholar 

  11. Cloete TE, Toerien DF, Pieterse AJH (1984) The bacteriological quality of water and fish of a pond system for the treatment of cattle feedlot effluent. Agricultural Wastes 9:1–15.

    Google Scholar 

  12. Colwell RR (1962) The bacterial flora of Puget Sound fish. J Appl Bacteriol 25:147–158

    Google Scholar 

  13. Ellis AE (1982) Differences between the immune mechanisms of fish and higher vertebrates. In: Roberts RJ (ed) Microbial diseases of fish. Academic Press, New York, London, pp 1–29

    Google Scholar 

  14. Frerichs GN, Hendrie MS (1985) Bacteria associated with diseases of fish. In: Collins CH, Grange JM (eds) Isolation and identification of microorganisms of medical and veterinary importance. Academic Press, Orlando, Florida, pp 355–369

    Google Scholar 

  15. Gillespie NC, MacRae IC (1975) The bacterial flora of some Queensland fish and its ability to cause spoilage. J Appl Bacteriol 39:91–100

    PubMed  Google Scholar 

  16. Gilmour A, McCallum MF, Allan MC (1976) A study of the bacterial types occurring on the skin and in the intestines of farmed plaice,Pleuronectes platessa. Aquaculture 7:161–172

    Google Scholar 

  17. Horsley RW (1973) The bacterial flora of the Atlantic salmon (Salmo salar L.) in relation to its environment. J Appl Bacteriol 36:377–386

    PubMed  Google Scholar 

  18. Lindsay GJH (1986) The significance of chitinolytic enzymes and lysozyme in rainbow trout (Salmo gairdneri) defence. Aquaculture 51:169–173

    Google Scholar 

  19. MacFarlane RD, McLaughlin JJ, Bullock GL (1986) Quantitative and qualitative studies of gut flora in striped bass from estuarine and coastal marine environments. J Wildlife Dis 22:344–348

    Google Scholar 

  20. Minami Z, Kajinta M, Hibino S (1972) Studies on the utilization of petro-yeast as diet of freshwater fish. I. The distribution of chitin-decomposing bacteria in digestive tracts. Bull Jap Soc Sci Fish 38:1013–1019

    Google Scholar 

  21. Mudarris M, Austin B (1988) Quantitative and qualitative studies of the bacterial microflora of turbot,Scophthalmus maximus L., gills. J Fish Biol 32:223–229

    Google Scholar 

  22. Munro ALS (1982) The pathogenesis of bacterial diseases of fishes. In: Roberts RJ (ed) Microbial diseases of fish. Academic Press, London, pp 131–149

    Google Scholar 

  23. Murray CK, Fletcher TC (1976) The immunohistochemical localization of lysozyme in plaice tissues. J Fish Biol 9:329–334

    Google Scholar 

  24. Newman JT, Jr, Cosenza BJ, Buck JD (1972) Aerobic microflora of the bluefish (Pomatomus saltatrix) intestine. J Fisheries Res Board of Canada 29:333–336

    Google Scholar 

  25. Niemi M, Taipalinen I (1982) Faecal indicator bacteria at fish farms. Hydrobiologia 86:171–175

    Google Scholar 

  26. Nieto TP, Toranzo AE, Barja JL (1984) Comparison between the bacterial flora associated with fingerling rainbow trout cultured in two different hatcheries in the north-west of Spain. Aquaculture 42:193–206

    Google Scholar 

  27. Peleteiro MC, Richards RH (1985) Identification of lymphocytes in the epidermis of the rainbow trout,Salmo gairdneri Richardson. J Fish Dis 8:161–172

    Google Scholar 

  28. Rice T, Buck DH, Gorden RN, Tazik PP (1984) Microbial pathogens and human parasites in an animal waste polyculture system. Prog Fish-Cult 46:230–238

    Google Scholar 

  29. Sakata T, Koreeda Y (1986) A numerical taxonomic study of the dominant bacteria isolated from tilapia intestines. Bull Jap Soc Sci Fish 52:1625–1634

    Google Scholar 

  30. Sakata T, Okabayashi J, Kakimoto D (1980) Variations in the intestinal microflora ofTilapia reared in fresh and sea water. Bull Jap Soc Sci Fish 46:313–317

    Google Scholar 

  31. Sakata T, Sugita H, Mitsuoka T, Kakimoto D, Kadota H (1980) Isolation of obligate anaerobes from the intestinal tracts of freshwater fish. Bull Jap Soc Sci Fish 46:511

    Google Scholar 

  32. Sakata T, Sugita H, Mitsuoka T, Kakimoto D, Kadota H (1980) Isolation and distribution of obligate anaerobic bacteria from the intestines of freshwater fish. Bull Jap Soc Sci Fish 46:1249–1255

    Google Scholar 

  33. Sar N, Rosenberg E (1987) Fish skin bacteria: Colonial and cellular hydrophobicity. Microb Ecol 13:193–202

    Google Scholar 

  34. Sera H, Ishida Y (1972) Bacterial flora in digestive tracts of marine fish. III. Classification of isolated bacteria. Bull Jap Soc Sci Fish 38:853–858

    Google Scholar 

  35. Sera H, Ishida Y, Kadota H (1972) Bacterial flora in the digestive tracts of marine fish. IV. Effect of H+ concentration and gastric juices on the indigenous bacteria. Bull Jap Soc Sci Fish 38:859–863

    Google Scholar 

  36. Shewan JM (1961) The microbiology of seawater fish. In: Borgstrom G (ed) Fish as food, vol I. Academic Press, London, pp 487–560

    Google Scholar 

  37. Shewan JM (1971) The microbiology of fish and fishery products—A progress report. J Appl Bacteriol 34:299–315

    PubMed  Google Scholar 

  38. Simidu U, Kaneko E, Aiso K (1969) Microflora of fresh and stored flatfish,Kareius bicoloratus. Bull Jap Soc Sci Fish 35:77–82

    Google Scholar 

  39. Stickney RR, Shumway SE (1974) Occurrence of cellulase activity in the stomachs of fishes. J Fish Biol 6:779–790

    Google Scholar 

  40. Sugita H, Ishida Y, Deguchi Y, Kadota H (1982) Bacterial flora in the gastrointestine ofTilapia nilotica adapted in seawater. Bull Jap Soc Sci Fish 48:987–991 (in Japanese)

    Google Scholar 

  41. Sugita H, Oshima K, Tamura M, Deguchi Y (1983) Bacterial flora in the gastrointestine of freshwater fishes in the river. Bull Jap Soc Sci Fish 49:1387–1395

    Google Scholar 

  42. Sugita H, Tsunohara M, Ohkoshi T, Deguchi Y (1988) The establishment of an intestinal microflora in developing goldfish (Carassius auratus) of culture ponds. Microb Ecol 15:333–344

    Google Scholar 

  43. Sugita H, Ushioka S, Kihara D, Deguchi Y (1985) Changes in the bacterial composition of water in a carp rearing tank. Aquaculture 44:243–247

    Google Scholar 

  44. Trust TJ (1975) Bacteria associated with the gills of salmonid fishes in freshwater. J Appl Bacteriol 38:225–233

    PubMed  Google Scholar 

  45. Trust TJ, Bull LM, Currie BR, Buckley JT (1979) Obligate anaerobic bacteria in the gastrointestinal microflora of the grass carp (Ctenopharyngodon idella), goldfish (Carassius auratus), and rainbow trout (Salmo gairdneri). J Fisheries Res Board of Canada 36:1174–1179

    Google Scholar 

  46. Trust TJ, Sparrow RAH (1974) The bacterial flora in the alimentary tract of freshwater salmonid fishes. Can J Microbiol 20:1219–1228

    PubMed  Google Scholar 

  47. Yoshimizu M, Kamiyama K, Kimura T, Sakai M (1976) Studies on the intestinal microflora of salmonids—IV. The intestinal microflora of fresh water salmon. Bull Jap Soc Sci Fish 42:1281–1290 (in Japanese)

    Google Scholar 

  48. Yoshimizu M, Kimura T, Sakai M (1976) Studies on the intestinal microflora of salmonids— I. The intestinal microflora of fish reared in fresh water and sea water. Bull Jap Soc Sci Fish 42:91–99 (in Japanese)

    Google Scholar 

  49. Yoshimizu M, Kimura T, Sakai M (1976) Studies on the intestinal microflora of salmonids— V. The intestinal microflora of the anadromous salmon. Bull Jap Soc Sci Fish 42:1291–1298 (in Japanese)

    Google Scholar 

  50. Yoshimizu M, Kimura T, Sakai M (1980) Microflora of the embryo and fry of salmonids. Bull Jap Soc Sci Fish 48:967–975

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Cahill, M.M. Bacterial flora of fishes: A review. Microb Ecol 19, 21–41 (1990). https://doi.org/10.1007/BF02015051

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF02015051

Keywords

Navigation