Skip to main content
Log in

Assessment of natural and induced genetic variation in Alstroemeria using random amplified polymorphic DNA (RAPD) markers

  • Published:
Euphytica Aims and scope Submit manuscript

Summary

We have used random amplified polymorphic DNA (RAPD) markers to study genetic variation in Alstroemeria. The first objective was to examine the discriminatory power of RAPD markers in different genotypes of Alstroemeria obtained by traditional breeding. All genotypes examined, including commercial Alstroemeria varieties, could be distinguished on the basis of their RAPD profiles. Progeny plants could be distinguished from their parents. A second objective of this study was to investigate whether RAPD markers can be used as a routine tool to detect mutant plants, as an alternative to glasshouse testing. To address this objective, we analysed Alstroemeria plants that carried phenotypically visible mutations that either were induced by irradiation using X-rays or were the result of somaclonal variation. In eight out of a total of 13 mutant Alstroemeria plants obtained after irradiation or tissue culture we detected no polymorphisms when compared to control plants that were considered to be non-mutated. Only in five of the mutant plants analysed we detected one to two polymorphisms. These results suggest that frequent genome rearrangements had not occurred in the mutant plants analysed. These results also demonstrate that the RAPD technique is an inappropriate tool for the rapid screening of Alstroemeria for induced variation. It that the RAPD technique is an inappropriate tool for the rapid screening of Alstroemeria for induced variation. It seems probable that this conclusion would be equally applicable in other plant genera in which induced variation has occurred. However, the RAPD technique is a simple and effective tool for genetic fingerprinting of Alstroemeria varieties, provided their differences are due to sexual propagation.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  • Anderberg M.R., 1973. Cluster Analysis for Applications. Academic Press Inc. New York.

    Google Scholar 

  • Bailey L.H. & E.Z. Bailey, 1976. Hortus Third: A Concise Dictionary of Plant Cultivars in the United States and Canada. Macmillan Publishing Co., New York.

    Google Scholar 

  • Broerties C. & H. Verboom, 1974. Mutation breeding of Alstroemeria. Euphytica 23: 39–44.

    Google Scholar 

  • Brown P.T.H., (1989) DNA methylation in plants and its role in tissue culture. Genome 31: 717–729.

    Google Scholar 

  • Brown P.T.H., E. Göbel & H. Lörz, 1991. RFLP analysis of Zea mays callus cultures and their regenerated plants. Theor Appl Genet 81: 227–232.

    Google Scholar 

  • Brown P.T.H., F.D. Lange, E. Kranz & H. Lörz, 1993. Analysis of single protoplasts and regenerated plants by PCR and RAPD technology. Mol Gen Genet 237: 311–317.

    Google Scholar 

  • Caetano-Anollés G., B.J. Bassam & P.M. Gresshoff, 1991. DNA amplification fingerprinting using very short arbitrary oligonu-cleotide primers. Bio/Technology 9: 553–557.

    Google Scholar 

  • Dallas J.F., 1988. Detection of DNA “fingerprints” of cultivated rice by hybridization with a human minisatellite probe. Proc Natl Acad Sci USA 85: 6831–6835.

    Google Scholar 

  • Doyle J.I. & J.L. Doyle, 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13–15.

    Google Scholar 

  • Evans D.A., 1989. Somaclonal variation: genetic basis and breeding applications. Trends Genet 5: 46–50.

    Google Scholar 

  • Falkenhagen E.R., 1985. Isozyme studies in provenance research of forest trees. Theor Appl Genet 69: 335–347.

    Google Scholar 

  • Gonzalez-Benito M.E. & P.G. Alderson, 1992. Callus induction and plant regeneration in Alstroemeria. J Exp Bot 43: 205–211.

    Google Scholar 

  • Heinze B. & J. Schmidt, 1994. Clonal fidelity of norway spruce somatic embryos analyzed by RAPD. In: J.A. Pardos, M.R. Ahuja & R.E. Rossello (Eds.), Biotechnology of Trees, Conf. Proc., 18–22 Oct. 1993, Valsain, Spain, pp. 143–148 INIA, Madrid.

    Google Scholar 

  • Hu J. & C.F. Quiros, 1991. Identification of broccoli and cauliflower cultivars with RAPD markers. Plant Cell Rep 10: 505–511.

    Google Scholar 

  • Isabel N., L. Tremblay, M. Michaud, F.M. Tremblay & J. Bousquet, 1993. RAPDs as an aid to evaluate the genetic integrity of somatic embryogenesis-derived populations of Picea mariana (Mill.) B.S.P. Theor Appl Genet 86: 81–87.

    Google Scholar 

  • Keil M. & A.R. Griffin, 1994. Use of random amplified polymorphic DNA (RAPD) markers in the discrimination and verification of genotypes in Eucalyptus. Theor Appl Genet 89: 442–450.

    Google Scholar 

  • Kuhns L.J. & T.A. Fretz, 1978. Distinguishing rose cultivars by polyacrylamide gel electrophoresis. I. Extraction and storage of protein and active enzymes from rose leaves. J Mol Biol 80: 575–599.

    Google Scholar 

  • Larkin P.J. & W.R. Scowcroft, 1981. Somaclonal variation-a novel source of variability from cell cultures for plant improvement. Theor Appl Genet 60:, 197–214.

    Google Scholar 

  • Levall M.W., K. Bengtsson, N.-O. Nilsson, A. Hjerdin & C. Halldén, 1994. Molecular characterization of UV-treated sugar beet somaclones using RFLP markers. Physiologia Plantarum 90: 216–220.

    Google Scholar 

  • Lin W.C. & P.L. Monette, 1987. In vitro propagation of Alstroemeria ‘Alsaan’. Plant Cell, Tissue and Organ Culture 9: 29–35.

    Google Scholar 

  • Loubaka L. & M. Keil, 1995. RAPD markers for use in discrimination and verification of genotypes in Eucalyptus-Training of a Congolese forester in RAPD technology. In: B.M. Potts, N.M.G. Borralho, J.B. Reid, R.N. Cromer, W.N. Tibbits & C.A. Raymond (Eds.), Eucalypt Plantations: Improving Fibre Yield and Quality, pp. 444–447, Proc. CRC-IUFRO Conf Hobart, 19–24 Feb., CRC fro Temperate Hardwood Forestry: Hobart, Australia.

    Google Scholar 

  • Müller E., P.T.H. Brown, S. Hartke & H. Lörz, 1990. DNA variation in tissue-culture-derived rice plants. Theor Appl Genet 80: 673–679.

    Google Scholar 

  • Nagamine T., G.A. Todd, K.P. McCann, H.J. Newbyry & B.V. Ford-Lloyd, 1989. Use of restriction fragment length polymorphism to fingerprint beets at the genotype and species levels. Theor Appl Genet 78: 847–851.

    Google Scholar 

  • Nordenstam B., 1978. Pilgrim from Lima-the route of alstroemeria to Sweden. Fauna-Flora (Stockh) 73: 134–136.

    Google Scholar 

  • Nybom H. (1991) Applications of DNA fingerprinting in plant breeding. In: T. Burke, G. Dolf, A.J. Jeffreys & R. Wolff (Eds.), DNA Fingerprinting Approaches and Applications, pp. 294–311. Birkhäuser Verlag, Basel, Switzerland.

    Google Scholar 

  • Pierik R.L.M., A.van Voorst, G. Booy, C.A.M.van Acker, C.L.C. Lelivelt & J.C.de Wit, 1988. Vegetative propagation of Alstroemeria hybrids in vitro. Acta Horticult 226: 81–89.

    Google Scholar 

  • Riedy M.F., W.J. HamiltonIII & C.F. Aquadro, 1992. Excess of non-parental bands in offspring from known primate pedigrees assayed using RAPD PCR. Nucl Acids Res 20: 918.

    Google Scholar 

  • Rogstad S.H., J.C. PattonII & B.A. Schaal, 1988. M13 repeat probe detects DNA minisatellite-like sequences in gymnosperms and angiosperms. Proc Natl Acad Sci USA 85: 9176–9178.

    Google Scholar 

  • Sabir A., H.J. Newbury, G. Todd, J. Catty & B.V. Ford-Lloyd, 1992. Determination of genetic stability using isozymes and RFLPs in beet plants regenerated in vitro. Theor Appl Genet 84: 113–117.

    Google Scholar 

  • Sambrook, J., E.F., Fritsch & T., Maniatis, 1989. Molecular Cloning: A Laboratory Manual. 2nd ed. Cold-Spring Harbor, New York.

  • Santi F. & M. Lemoine, 1990. Genetic markers for Prunus avium L. 2. Clonal identifications and discrimination from P. cerasus and P. cerasus x P. avium. Ann Sci For 47: 219–227.

    Google Scholar 

  • Shenoy V.B. & I.K. Vasil, 1992. Biochemical and molecular analysis of plants derived from embryogenic tissue cultures of napier grass (Pennisetum purpureum K. Schum). Theor Appl Genet 83: 947–955.

    Google Scholar 

  • Staub J.E. & V. Meglic, 1993. Molecular genetic markers and their legal relevance for cultivar discrimination: a case study in cucumber. Hort Technology 3: 291–300.

    Google Scholar 

  • Stephens J.L. & H.G. Hughes, 1993. Isozyme characterization in Alstroemeria species and cultivars. HortSci 28: 222.

    Google Scholar 

  • Taylor P.W.J., J.R. Geijskes, H.-L. Ko, T.A. Fraser, R.J. Henry & R.G. Birch, 1995. Sensitivity of random amplified polymorphic DNA analysis to detect change in sugar cane during tissue culture. Theor Appl Genet 90: 1169–1173.

    Google Scholar 

  • Tobolski J.J. & R.D. Kemery, 1992. Identification of red maple cultivars by isozyme analysis. HortSci 27: 169–171.

    Google Scholar 

  • Torres A.M., T. Millán & J.I. Cubero, 1993. Identifying rose cultivars using random amplified polymorphic DNA markers. HortSci 28: 333–334.

    Google Scholar 

  • Vallés M.P., Z.Y. Wang, P. Montavon, I. Potrykus & G. Spangenberg, 1993. Analysis of genetic stability of plants regenerated from suspension cultures and protoplasts of meadow fescue (Festuca pratensis Huds.). Plant Cell Rep 12: 101–106.

    Google Scholar 

  • Vyskot B., J. Fajkus, P. Kuglik, B. Koukalova & V. Kuhrova, 1991. Genome modifications in protoplast-derived tobacco plants: phenotypic evaluation and RFLP analysis. Biologia Plantarum (Praha) 33: 455–460.

    Google Scholar 

  • Weising K., F. Weigand, A.J. Driesel, G. Kahl, H. Zischler & J. Epplen, 1989. Polymorphic simple GATA/GACA repeats in plant gnomes. Nucl Acids Res 17: 10128.

    Google Scholar 

  • Weising K., J. Ramser, D. Kaemmer, G. Kahl & J.T. Epplen, 1991. Oligonucleotide fingerprinting in plants and fungi. In: T. Burke, G. Dolf, A.J. Jeffreys & R. Wolff (Eds.), DNA Fingerprinting Approaches and Applications, pp. 312–329. Birkhäuser Verlag. Basel, Switzerland.

    Google Scholar 

  • Williams J.G.K., A.R. Kubelik, K.J. Livak, J.A. Rafalski & S.V. Tingey, 1990. DNA polymophisms amplified by arbitrary primers are useful as genetic markers. Nucl Acids Res 18: 6531–6535.

    Google Scholar 

  • Welsh J., C. Peterson & M. McClelland, 1991. Polymorphisms generated by arbitrarily primed PCR in the mouse: application to strain identification and genetic mapping. Nucl Acids Res. 19: 303–306.

    Google Scholar 

  • Wolff K., E.D. Schoen & J. Peters-Van Rijn, 1993. Optimizing the generation of random amplified polymorphic DNAs in chrysanthemum. Theor Appl Genet 86: 1033–1037.

    Google Scholar 

  • Zabeau, M. & P. Vos, 1993. Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application, No. 92402629.7.

  • Zietkiewicz E., A. Rafalski & D. Labuda, 1994. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176–183.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Anastassopoulos, E., Keil, M. Assessment of natural and induced genetic variation in Alstroemeria using random amplified polymorphic DNA (RAPD) markers. Euphytica 90, 235–244 (1996). https://doi.org/10.1007/BF00023864

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00023864

Key words

Navigation