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Abiotic Stress Tolerance in Field Crops: Integration of Omics Approaches

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Agronomic Crops

Abstract

The development, growth, and productivity of field crops are negatively influenced by abiotic stresses resulting in significant losses in crop yield. Therefore, understanding tolerance of agronomic crops to abiotic stress factors like drought, salinity, heat, and chilling is of paramount importance for plant scientists for effective management. However, due to the complexity of abiotic stress response and tolerance, initial efforts through gene-based approaches were not enough to understand whole level mechanisms. Recently, tremendous developments made in the field of omics (genomics, transcriptomics, proteomics, metabolomics, and phenomics) have opened new avenues to understand and investigate the complex mechanisms of abiotic stress tolerance in plants, although integration of data collected from omics studies with such traits is still a challenging one. This chapter will emphasize the significance of omics field in understanding crop responses to different abiotic stresses, focusing on the recent developments made in field of omics with future prospects to overcome the major drawbacks of omic approaches.

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Abbreviations

2D-PAGE:

2-dimensional polyacrylamide gel electrophoresis

ABA:

abscisic acid

CE-MS:

capillary electrophoresis mass spectroscopy

EGFP:

enhanced green fluorescent protein

FT-ICR-MS:

Fourier transform ion cyclotron resonance mass spectroscopy

G x E:

genotype–environment interaction

GBS:

genotyping by sequencing

GC-MS:

gas-chromatography mass spectroscopy

GWAS:

genome-wide association study

ICP-MS:

inductively coupled plasma mass spectrometer

ICP-OES:

inductively coupled plasma-optical emission spectrometry

LA-ICP-MS:

laser ablation inductively coupled plasma mass spectroscopy

LC-MS:

liquid-chromatography mass spectroscopy

MALDI-TOF:

matrix-assisted laser desorption/ionization time-of-flight

MAS:

marker-assisted selection

mQTL:

metabolite quantitative trait locus

MS:

mass spectroscopy

MW:

molecular weight

NAA:

neutron activation analysis

NGS:

next-generation sequencing

NMR:

nuclear magnetic resonance

pI:

isoelectric point

QTL:

quantitative trait loci

ROS:

reactive oxygen species

SNP:

single-nucleotide polymorphism

XAP:

X-ray absorption spectroscopy

XRF:

X-ray fluorescence

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Acknowledgments

All authors have equally contributed to the writing of this chapter. The corresponding author, Zahide Neslihan Ozturk Gokce, wants to acknowledge their tremendous effort in literature search of this wide topic. We would like to apologize to the scientists whose work and publication have not been emphasized in this chapter due to page limitations.

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  1. Department of Agricultural Genetic Engineering, Ayhan Sahenk Faculty of Agricultural Sciences and Technologies, Nigde Omer Halisdemir University, Nigde, Turkey

    Zahide Neslihan Ozturk Gokce, Seyda Akbas, Sefa Ayten, M. Hussain Azimi, Reyhan Das, Saime Buse Guven, Ebrar Karabulut, Seher Omezli, Zehra Uzer, Bayram Ali Yerlikaya & Allah Bakhsh

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    Mirza Hasanuzzaman

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Ozturk Gokce, Z.N. et al. (2020). Abiotic Stress Tolerance in Field Crops: Integration of Omics Approaches. In: Hasanuzzaman, M. (eds) Agronomic Crops. Springer, Singapore. https://doi.org/10.1007/978-981-15-0025-1_24

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