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Biochemical and Molecular Methods for the Study of Marine Fungi

  • Chapter
Molecular Approaches to the Study of the Ocean

Abstract

The term ‘fungus’ and the organisms studied by mycologists can be characterized by different definitions. The classical definition of a fungus (Alexopoulos and Mims, 1979) includes ‘eukaryotic, spore-bearing, achlorophyllous organisms that generally reproduce sexually and asexually, and whose usually filamentous, branched somatic structures are typically surrounded by cell walls containing chitin or cellulose, or both of these substances, together with many other complex organic molecules’. The authors recognized the limitations of the definition and a more appropriate term that characterizes the scope of mycological investigation was provided by Kendrick (1992): ‘eukaryotic, heterotrophic, absorptive organisms that develop a rather diffuse, branched, tubular body and reproduce by means of a spore’. Because the Kendrick definition is phylogenetically diffuse, the fungal and fungal-like organisms can be found in two kingdoms, the Chromista and the Fungi (Cavalier-Smith, 1993). As indicated in the definitions, a major difference between the Fungi and the Chromista lies in the presence and type of cell wall. As implied by the Kendrick definition, mycologists tend to study organisms that look and behave like fungi, regardless of their phylogenetic origin. An omission that should be noted is that neither definition explicitly states that many fungi are characterized by unicellular growth phases that may lack tubular or filamentous growth.

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References

  • Alderman, D.J. and Polglase, J.L. (1986) Are fungal diseases significant in marine environments? in Biology of Manne Fungi (ed. S.T. Moss), Cambridge University Press, Cambridge, pp. 189–98.

    Google Scholar 

  • Alexopoulos, C.J. and Mims, C.W. (1979) Introductory Mycology, 3rd edn, John Wiley, New York.

    Google Scholar 

  • Anastasiou, C.J. and Churchland, L.M. (1969) Fungi on decaying leaves in marine habitats. Canadian Journal of Botany, 47, 251–7.

    Google Scholar 

  • Anderson, P., Davidson, C.M., Iittlejohn, D. et al. (1994) Extraction of ergosterol from peaty soils and determination by high performance liquid chromatography. Talanta, 41, 711–20.

    PubMed  CAS  Google Scholar 

  • Aylor, D.E. and Anagnostakis, S.L. (1991) Active discharge distance of ascospores of Venturia inaequalis. Phytopathology, 81, 548–51.

    Google Scholar 

  • Baerlocher, F. (ed.) (1992) The Ecology of Aquatic Hyphomycetes, Springer-Verlag, New York.

    Google Scholar 

  • Bandoni, R.J. (1995) Dimorphic Heterobasidio-mycetes: taxonomy and parasitism. Studies in Mycology, 39, 13–28

    Google Scholar 

  • Barr, D.J.S. and Désaulniers, N.L. (1992) The flagellar apparatus in zoospores of Phytophthora, Pythium, and Halophytophthora. Canadian Journal of Botany, 70, 2163–9.

    Google Scholar 

  • Barr, M.E. (1987) Prodromus to Class Loculoas-comycetes. Lubrecht & Cramer, Forestburgh, NY.

    Google Scholar 

  • Beakes, G.W. (1989) Oomyeete fungi: their phytogeny and relationship to chromophyte algae, in The Chromophyte Algae: Problems and Perspectives (eds J.C. Green, B.S.C. Leadbetter and W.L. Diver), Clarendon Press Oxford, pp. 325–42.

    Google Scholar 

  • Bermingham, S., Dewey, F.M. and Maltby, L. (1995a) Development of a monoclonal antibody-based immunoassay for the detection and quantification of Anguillaspora longissima colonizing leaf material. Applied and Environmental Microbiology, 61, 2606–13.

    PubMed  CAS  Google Scholar 

  • Bermingham, S., Maltby, L. and Cooke, R.C. (1995b) A critical assessment of ergosterol as an indicator of fungal biomass. Mycological Research, 99, 479–84.

    CAS  Google Scholar 

  • Bland, C.E., Couch, J.N, and Newell, S.Y. (1981) Identification of Coelomomyces, Saprolegniales and Lagenidiales, in Microbial Control of Pests and Plant Diseases 1970–1980 (ed. H.D. Surges), Academic Press, New York, pp. 129–62.

    Google Scholar 

  • Brasier, C.M. and Hansen, E.M. (1992) Evolutionary biology of Phytophthora. Part II: Phytogeny, specation, and population structure. Annual Review of Phytopathology, 30, 173–200.

    Google Scholar 

  • Bremer, G.B. (1976) The ecology of marine lower fungi, in Recent Advances in Aquatic Mycology (ed. E.B.G. Gareth Jones), Elek Science, London, pp. 313–31.

    Google Scholar 

  • Carlile, M.J. (1995) The success of the hypha and mycelium, in The Growing Fungus (eds N.A.R. Gow and G.M. Gadd), Chapman & Hall, London, pp. 3–19.

    Google Scholar 

  • Carmichael, J.W., Kendrick, W.B., Conners, I.L. and Sigler, L. (1980) Genera of Hyphamycetes. University of Alberta Press, Edmonton.

    Google Scholar 

  • Carroll, G.C. and Wicklow, D.T. (1992) The Fungal Community, Its Organization and Role in the Ecosystem, 2nd edn, Marcel Dekker, New York.

    Google Scholar 

  • Cavalier-Smith, T. (1993) The Kingdom Protozoa and its 18 phyla. Microbiological Reviews, 57(4), 953–94.

    PubMed  CAS  Google Scholar 

  • Chamberlain, A.H.L. (1980) Cytochemical and ultrastructural studies on the cell walls of Thrustochytrium spp. Botanica Marina, 23, 669–77.

    CAS  Google Scholar 

  • Chin-Leo, G. (1997) Bacterial secondary productivity, in Manual of Environmental Microbiology (eds M. McInerney, L. Stetzenbach, C.J. Hurst et al., ASM Press, Washington, D.C., pp 263–71.

    Google Scholar 

  • Coleman, N.K. and Vestal, J.R. (1987) An epifluo-rescent microscopy study of enzymatic hydrolysis of fluorescein diacetate associated with the ectoplasmic net elements of the protist Thraustochytrium striatum, Canadian Journal of Microbiology, 33, 841–3.

    CAS  Google Scholar 

  • Cooke, R.C. and Whipps, J.M. (1993) Ecophysiology of Fungi. Blackwell, Oxford.

    Google Scholar 

  • Dewey, F.M., Twiddy, D.R., Philips, S.I. et al. (1992) Development of a quantitative monoclonal antibody-based immunoassay for Humicola lanuginosa on rice grains and comparison with conventional assays. Food and Agricultural Immunology, 4, 153–67.

    Google Scholar 

  • Dick, M.W. (1990) Phylum Oomycota, in Handbook of Protoctista (eds L. Margulis, J.O. Corliss, M. Melkonian and D.J. Chapman), Jones & Bartlett, Boston, pp. 661–85.

    Google Scholar 

  • Dick, M.W. (1995) Sexual reproduction in the Peronosporomycetes (chromistan fungi). Canadian Journal of Botany, 73(SuppI), S712–24.

    Google Scholar 

  • Dick, M.W. (1997) Straminipilous fungi: a new classification for the biflagellate fungi and their uniflagellate relatives, with particular reference to lagenidiaceous fungi. Mycological Papers of the Centre for Agriculture and Biosciences (in press).

    Google Scholar 

  • Diviacco, S., Norio, P., Zentilin, L. et al. (1992) A novel procedure for quantitative polymerase chain reaction by coamplification of competitive templates. Gene, 122, 313–20.

    PubMed  CAS  Google Scholar 

  • Dix, N.J. and Webster, J. (1995) Fungal Ecology, Chapman & Hall, London.

    Google Scholar 

  • Doubles, J.C. and McLaughlin, D.J. (1992) Basidial development, life history and the anamorph of Kriegeria eriophori. Mycologia, 84(5), 668–78.

    Google Scholar 

  • Erwin, D.L. and Ribeiro, O.I. (1996) Phytophthora Diseases Worldwide, APS Press, St Paul, MN.

    Google Scholar 

  • Evans, H.C. (1995) Fungi as a biocontrol agent of weeds: a tropical perspective. Canadian Journal of Botany, 73 (1, A-D), S58–64.

    Google Scholar 

  • Fayret, J., Lacoste, L., Alais, J. et al. (1979) Composition sterolique et morphogeneses reproductrices chez Gnomonia leptostyla. Phytochemistry, 18, 431–5.

    CAS  Google Scholar 

  • Fell J.W. (1976) Yeasts in oceanic regions, in Recent Advances in Aquatic Mycology (ed. E.B.G. Jones), Elek Science, London, pp. 93–124.

    Google Scholar 

  • Fell, J.W. (1993) Rapid identification of yeast species using three primers in a polymerase chain reaction. Molecular Marine Biology and Biotechnology, 3(2), 174–80.

    Google Scholar 

  • Fell, J.W. (1995) rDNA targeted oligonucleotide primers for the identification of pathogenic yeasts in a polymerase chain reaction. Journal of Industrial Microbiology, 14, 475–7.

    PubMed  CAS  Google Scholar 

  • Fell, J.W. and Findlay, R.H. (1987) The potential use of sterols and phospholipid fatty acids as taxonomic tools among teliospore-forming red yeasts, in The Expanding Realm of Yeast-like Fungi (eds A.S. de Hoog, M. Th. Smith and A.C.M. Weijman), Elsevier, Amsterdam, pp. 309–20.

    Google Scholar 

  • Fell, J.W. and Findlay, R.H. (1989) Biochemical indicators of microbial decomposition in coastal and oceanic environments, in Marine Science of the Arabian Sea (eds M. Thompson and N.M. Tirmizi), American Institute of Biological Sciences, Washington, D.C., pp. 375–92.

    Google Scholar 

  • Fell, J.W. and Kurtzman, C.P. (1990) Nucleotide sequence analysis of a variable region of the large subunit rRNA for identification of marine-occurring yeasts. Current Microbblogy, 21, 295–300.

    CAS  Google Scholar 

  • Fell, J.W. and Master, I.M. (1975) Phycomycetes (Phytophthora spp. nov. and Pythium sp. nov.) associated with degrading mangrove (Rhizophora mangle) leaves. Canadian Journal of Botany, 53, 2908–22.

    Google Scholar 

  • Fell, J.W. and Tallman, A.S. (1982) Multiple allelic incompatibility factors among bifactorial strains of the yeast Leucosporidium (Candida) scotii. Current Microbiology, 3, 213–16.

    Google Scholar 

  • Fell, J.W., Master, I.M. and Newe U. S.Y. (1980) Laboratory model of the potential role of fungi in the decomposition of red mangrove (Rhizophora mangle) leaf litter, in Marine Benthic Dynamics (eds K.R. Tenore and B.C. Coull), University of South Carolina Press, Columbia, pp. 359–72.

    Google Scholar 

  • Fell, J.W., Statzell-Tallman, A., Lutz, M.J. and Kurtzman, C.P. (1992) Partial rRNA sequences in marine yeasts; a model for identification of marine eukaryotes. Molecular Marine Biology and Biotechnology, 1, 175–86.

    PubMed  CAS  Google Scholar 

  • Fell, J.W., Boekhout, T. and Freshwater, D.W. (1995) The role of nucleotide analysis in the systematics of the yeast genera Cryptococcus and Rhodotorula. Studies in Mycology, 38, 129–46.

    Google Scholar 

  • Findlay, R.H., Fell, J.W., Coleman, N.K. and Vestal, J.R. (1986) Biochemical indicators of the role of fungi and thraustochytrids in mangrove detrital systems, in The Biology of Marine Fungi (ed. S.T. Moss), Cambridge University Press, Cambridge, pp. 91–104.

    Google Scholar 

  • Frankland, J.C. (1982) Biomass and nutrient cycling by decomposer basidiomycetes, in Decomposer Basidiomycetes: Their Biology and Ecology (eds J.C. Frankland, J.N. Hedger and M.J. Swift), Cambridge University Press, Cambridge, pp. 241–61.

    Google Scholar 

  • Frankland, J.C., Dighton, J. and Boddy, L. (1990) Methods for studying fungi in soil and forest litter, in Methods in Microbiology, Vol. 22 (eds R. Grigorova and J.R. Norris), Academic Press, New York, pp. 343–403.

    Google Scholar 

  • Frey, B., Vilariño, A., Schüepp, H. and Arines, J. (1994) Chitin and ergosterol content of extraradical and intraradical mycelium of the vesicular-arbuscular mycorrhizal fungus Glomus intraradices. Soil Biology and Biochemistry, 26, 711–17.

    CAS  Google Scholar 

  • Fuhrman, J.A. and Noble, R.T. (1995) Viruses and protists cause similar bacterial mortality in coastal seawater. Limnology and Oceanography, 40, 1236–42.

    Google Scholar 

  • Gaertner, A. (1968) Die flucktuationin Mariner niederer Pilze in der Deatachen Bucht 1965 and 1966. Veröffentlichen Institut Meeresforschung Bremerhaven, 3, 105–20.

    Google Scholar 

  • Gao, Y., Chen, T. and Breuil, C. (1993) Ergosterol — a measure of fungal growth in wood for staining and pitch control fungi. Biotechnology Techniques, 7, 621–6.

    CAS  Google Scholar 

  • Gessner, M.O. and Chauvet, E. (1993) Ergosterol-to-biomass conversion factors for aquatic hyphomycetes. Applied and Environmental Microbblogy, 59, 502–7.

    CAS  Google Scholar 

  • Gessner, M.O. and Chauvet, E. (1997) Growth and production of aquatic hyphomycetes in decomposing litter. Limnology and Oceanography (in press).

    Google Scholar 

  • Gessner, M.O. and Newell, S.Y. (1997) Bulk quantitative methods for the examination of eukaryotic organoosmotrophs in plant litter, in Manual of Environmental Microbiology (eds M. McInerney, L. Stetzenbach, C.J. Hurst et al.), ASM Press, Washington, D.C., pp. 295–308.

    Google Scholar 

  • Girard, V. and Fèvre, M. (1984) α-1-4 and α-1-3 glucan synthases are associated with the plasma membrane of the fungus Saprolegnia. Planta, 160, 400–6.

    CAS  Google Scholar 

  • Goettel, M.S., Johnson, D.L. and Inglis, G.D. (1995) The role of fungi in the control of grasshoppers. Canadian Journal of Botany, 73(1, A-D), S71–5.

    Google Scholar 

  • Gooday, G.W. (1995) Cell walls, in The Growing Fungus (eds N.A.R. Gow and G.M. Gadd), Chapman & Hall, London, pp. 43–74.

    Google Scholar 

  • Gutell, R.R. and Fox, G. (1988) Compilation of large subunit RNA sequences presented in a structural format. Nucleic Acids Research, 16 (Suppl.),rl75–r269.

    Google Scholar 

  • Hamamoto, M., Sugiyama, J. and Komagata, K. (1988) Transfer of Rhodotorula hasegawae to a new basidomycetous genus Erythrobasidium hasegawae comb. nov. Journal of General Applied Microbiology, 34, 279–87.

    Google Scholar 

  • Haynes, K.A., Westerneng, T.J., Fell, J.W. and Moens, W. (1995) Detection and identification of pathogenic fungi by polymerase chain reaction amplification of large subunit ribosomal DNA. Journal of Medical and Veterinary Mycology, 33, 319–25.

    PubMed  CAS  Google Scholar 

  • Hill, T.J.C., McPherson, E.F., Harris, J.A. and Birch, P. (1993) Mierobial biomass estimated by phos-pholipid phosphate in soils with diverse microbial communities. Soil Biology and Biochemistry, 25, 1779–86.

    Google Scholar 

  • Ho, H.H. and Jong, S.C. (1990) Halophytophthora, gen. nov., a new member of the family Pythiaceae. Mycotaxon, 36, 377–82.

    Google Scholar 

  • Ho, S.N., Hunt, R.M., Pullen, J.K. and Pease, L.R. (1989) Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene, 77, 51–9.

    PubMed  CAS  Google Scholar 

  • Hodson, R.E., Dustman, W.A., Garg, R.P. and Moran, M.A. (1995) In situ PCR for visualization of microscale distribution of specific genes and gene products in prokaryotic communities. Applied and Environmental Microbiology, 61, 4074–82.

    PubMed  CAS  Google Scholar 

  • Johnson, T.W. and Sparrow, F.K. (1961) Fungi in Oceans and Estuaries, J. Cramer, Weinheim.

    Google Scholar 

  • Jones, E.B.G. (1976) Recent Advances in Aquatic Mycology, Elek Science, London.

    Google Scholar 

  • Jones, E.B.G. (1995) Ultrastructure and taxonomy of the aquatic ascomycetous order Halo-sphaeriales. Canadian Journal of Botany, 73, S790–801.

    Google Scholar 

  • Karling, J.S. (1981) Predominantly Holocarpic and Eucarpic Simple Biflagellate Phycomycetes, J. Cramer, Vaduz.

    Google Scholar 

  • Kaya, K., Sano, T. and Shiraishi, F. (1995) Astasin, a novel cytotoxic carbohydrate-conjugated ergosterol from the colorless euglenoid, Astasia longa. Biochimica et Biophysica Acta, 1255, 201–4.

    PubMed  Google Scholar 

  • Kendrick, W.B. (1992) The Fifih Kingdom, 2nd edn Focus Texts, Newburyport, MA.

    Google Scholar 

  • Kerry, B.R. (1995) Ecological considerations for the use of the nematophagous fungus, Verticillium chlamydosporium, to control plant parasitic nematodes. Canadian Journal of Botany, 73(1, A-D), S65–70.

    Google Scholar 

  • Kohlmeyer, J. and Kohlmeyer, E. (1979) Marine Mycology, The Higher Fungi, Academic Press, New York.

    Google Scholar 

  • Kohlmeyer, J. and Volkmann-Kohlmeyer, B. (1991) Illustrated key to the filamentous higher fungi. Botanica Marina, 34, 1–61.

    Google Scholar 

  • Kohlmeyer, J. and Volkmann-Kohlmeyer, B. (1992) Two Ascomycotina from coral reefs in the Caribbean and Australia, Cryptogamic Botany, 2, 367–74.

    Google Scholar 

  • Kohlmeyer, J., Bebout, B. and Volkmann-Kohlmeyer, B. (1995a) Decomposition of mangrove wood by marine fungi and teredinids in Belize. PSZNI Marine Ecology, 16, 27–39.

    Google Scholar 

  • Kohlmeyer, J., Volkmann-Kohlmeyer, B. and Eriksson, O.E. (1995b) Fungi on Juncus roemerianus 2. New dictyosporous ascomycetes. Botanica Marina, 38, 165–74.

    Google Scholar 

  • Kohlmeyer, J., Volkmann-Kohlmeyer, B. and Newell, S.Y. (1997) Marine and estuarine mycelial eumycotes and oomycotes, in Measuring and Monitoring Biological Diversity. Standard Methods for Fungi (eds G.M. Mueller, G. Bills, H. Burdsall and A. Rossman), Smithsonian Institution Press, Washington, D.C.

    Google Scholar 

  • Kurtzman, C.P. and Fell, J.W. (1997) The Yeasts, A Taxonomic Study, 4th edn, Elsevier, Amsterdam.

    Google Scholar 

  • Kurtzman, C.P. and Robnett, C.J. (1995) Molecular relationships among hyphal ascomycetous yeast and yeastlike taxa. Canadian Journal of Botany, 73, S824–30.

    Google Scholar 

  • LeCampion-Alsumard, T., Golubic, S. and Priess, A. (1995) Fungi in corals: symbiosis or disease? Interaction between polyps and fungi causes pearl-like skeleton biomineralization. Marine Ecology Progress Series, 117, 137–47.

    Google Scholar 

  • Leipe, D.D., Wainwright, P.O., Gunderson, J.H. et al. (1994) The stramenopiles from a molecular perspective: 6S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis. Phycology, 33, 369–77.

    Google Scholar 

  • Leitch, A.R., Schwarzacher, T., Jackson, D. and Leith, I.J. (1994) In Situ Hybridization: α Practical Guide, Royal Microscopical Society Microscopy Handbooks 27, Coronet Books, Philadelphia.

    Google Scholar 

  • Longcore, J.E. (1995) Morphology and zoospore ultrastructure of Entophlyctis luteolus sp. nov. (Chytridiales): Implications for chytrid taxonomy. Mycologia, 87, 25–33.

    Google Scholar 

  • McLaughlin, E., Frieders, M. and Lu, H. (1995) A microscopist’s view of heterobasidiomycete phytogeny. Studies in Mycology, 38, 91–110.

    Google Scholar 

  • Miller, J.D., Moharir, Y.E., Findlay, J.A. and Whitney, N.J. (1984) Marine fungi of the Bay of Fundi VI. Growth and metabolites of Lepto-sphaeria oraemaris, Monodictys pelagica, and Dendryphiella satina. Proceedings of the Nova Scotia Academy of Science, 34, 1–18.

    Google Scholar 

  • Miller, J.D., Jones, E.B.G., Moharir, Y.E. and Finlay, J.A. (1985) Colonization of wood blocks by marine fungi in Langstone Harbour. Botanica Marina, 28, 251–7.

    Google Scholar 

  • Moss, S.T. (1986a) Biology and phytogeny of the Labyrinthulales and Thraustochytriales, in The Biology of Marine Fungi (ed. S.T. Moss), Cambridge University Press, Cambridge, pp. 105–30.

    Google Scholar 

  • Moss, S.T. (1986b) The Biology of Marine Fungi, Cambridge University Press, Cambridge.

    Google Scholar 

  • Muehlstein, L.K. (1992) The host-pathogen interaction in the wasting disease of eelgrass, Zostera marina. Canadian Journal of Botany, 70, 2081–8.

    Google Scholar 

  • Mulisch, M. (1993) Chitin in protistan organisms. Distribution, synthesis and deposition. European Journal of Protistology, 29, 1–18.

    PubMed  CAS  Google Scholar 

  • Nakagiri, A. (1993) A new marine ascomycete in Spathulosporales, Hispidicarpomyces galaxauricola gen. et sp. nov. (Hispidicarpomycetaceae fam. nov.), inhabiting a red alga, Galaxaura falcata. Mycologia, 85, 638–52.

    Google Scholar 

  • Nakagiri, A., Newell, S.Y. and Ito, T. (1994) Two new Halophytophthora species, H. tartarea and H. masteri, from intertidal decomposing leaves in saltmarsh and mangrove regions. Mycosdence, 35, 223–32.

    Google Scholar 

  • Nakamura, K. and Hatai, K (1995) Three species of Lagenidiales isolated from the eggs and zoeae of the marine crab Portunus pelagicus. Mycosdence, 36, 87–95.

    Google Scholar 

  • Newell, S.Y. (1992a) Autumn distribution of marine Pythiaceae across a mangrove-saltmarsh boundary. Canadian Journal of Botany, 70, 1912–16.

    Google Scholar 

  • Newell, S.Y. (1992b) Estimating fungal biomass and productivity in decomposing litter, in The Fungal Community, 2nd edn (eds G.C. Carroll and D.T. Wicklow), Marcel-Dekker, New York, pp. 521–61.

    Google Scholar 

  • Newell, S.Y. (1993a) Decomposition of shoots of a saltmarsh grass. Advances in Microbial Ecology, 13, 301–26.

    Google Scholar 

  • Newell, S.Y. (1993b) Membrane-containing fungal mass and fungal specific growth rate in natural samples, in Handbook of Methods in Aquatic Microbial Ecology (eds P.F. Kemp, B.F. Sherr, E.B. Sherr and J.J. Cole), Lewis Publishers, Boca Raton, FL, pp. 579–86.

    Google Scholar 

  • Newell, S.Y. (1994a) Ecomethodology for organoosmotrophs: prokaryotic unicellular versus eukaryotic mycelial. Microbial Ecology, 28, 151–7.

    Google Scholar 

  • Newell, S.Y. (1994b) Total and free ergosterol in mycelia of saltmarsh ascomycetes with access to whole leaves or aqueous extracts of leaves. Applied and Environmental Microbiology, 60, 3479–82.

    PubMed  CAS  Google Scholar 

  • Newell, S.Y. (1995) Minimizing ergosterol loss during preanalytical handling and shipping of samples of plant litter. Applied and Environmental Microbiology, 61, 2794–7.

    PubMed  CAS  Google Scholar 

  • Newell, S.Y. (1996a) Established and potential impacts of eukaryotic mycelial decomposers in marine/terrestrial ecotones. Journal of Experimental Marine Biology and Ecology, 200, 187–206.

    Google Scholar 

  • Newell, S.Y. (1996b) The [14C]acetate-to-ergosterol method: factors for conversion from acetate incorporated to organic fungal mass synthesized. Soil Biology and Biochemistry, 28, 681–3.

    CAS  Google Scholar 

  • Newell, S.Y. and Baerlocher, F. (1993) Removal of fungal and total organic matter from decaying cordgrass leaves by shredder snails. Journal of Experimental Marine Biology and Ecology, 171, 39–49.

    Google Scholar 

  • Newell, S.Y. and Fallon, R.D. (1991) Toward a method for measuring instantaneous fungal growth rates in field samples. Ecology, 72, 1547–59.

    Google Scholar 

  • Newell, S.Y. and Fell, J.W. (1980) Mycoflora of turtlegrass (Thalassia testudinum Konig) as recorded after seawater incubation. Botanica Marina, 23, 265–75.

    Google Scholar 

  • Newell, S.Y. and Fell, J.W. (1992a) Ergosterol content of living and submerged, decaying leaves and twigs of red mangrove. Canadian Journal of Botany, 38, 979–82.

    CAS  Google Scholar 

  • Newell, S.Y. and Fell, J.W. (1992b) Distribution and experimental responses to substrate of marine oomycetes (Halophytophthora spp.) in mangrove ecosystems. Mycological Research, 96, 851–6.

    Google Scholar 

  • Newell, S.Y. and Fell, J.W. (1995) Do halophytophthoras (marine Pythiaceae) rapidly occupy fallen leaves by intraleaf mycelial growth? Canadian Journal of Botany, 73, 761–5.

    Google Scholar 

  • Newell, S.Y. and Wasowski, J. (1995) Sexual productivity and spring intramarsh distribution of a key saltmarsh microbial secondary producer. Estuaries, 18, 241–9.

    Google Scholar 

  • Newell, S.Y., Cefalu, R. and Fell, J.W. (1977) Myzocytium, Haptoglossa, and Gonimochaete (fungi) in littoral marine nematodes. Bulletin of Marine Science, 27, 177–207.

    Google Scholar 

  • Newell, S.Y., Arsuffi, T.L. and Fallon, R.E, (1988a) Fundamental procedures for determining ergosterol content of decaying plant material by liquid chromatography. Applied and Environmental Microbiology, 54, 1976–9.

    Google Scholar 

  • Newell, S.Y., Fallon, R.D., Sherr, B.F. and Sherr, E.B. (1988b) Mesoscale temporal variation in bacterial standing crop, percent active cells, productivity and output in a saltmarsh tidal river. Verhandlungen Internationale Vereinigen Limnologie, 23, 1839–45.

    Google Scholar 

  • Newell, S.Y., Porter, D. and Lingle, W.L. (1996a) Lignocellulolysis by ascomycetes (Fungi) of a saltmarsh grass (smooth cordgrass). Microscopy Research and Technique, 33, 32–46.

    PubMed  CAS  Google Scholar 

  • Newell, S.Y., Arsuffi, T.L. and Palm, L.A. (1996b) Misting and nitrogen fertilization of shoots of a saltmarsh grass: effects upon fungal decay of leaf blades. Oecologia, 108, 495–502.

    Google Scholar 

  • Newton, C.R. and Graham, A. (1994) PCR, Bios Science, Oxford.

    Google Scholar 

  • Noga, E.J. (1993) Fungal diseases of marine and estuarine fishes, in Pathobiology of Marine and Estuarine Organisms (eds J.A. Couch and J.W. Fournie), CRC Press, Boca Raton, FL, pp. 85–110.

    Google Scholar 

  • Nout, M.J.R. (1992) Ecological aspects of mixed-culture food fermentations, in The Fungal Community, 2nd edn (eds G.C. Carroll and D.T. Wicklow), Marcel-Dekker, New York, pp. 817–51.

    Google Scholar 

  • Nylund, J.-E. and Wallander, H. (1992) Ergosterol analysis as a means of quantifying mycorrhizal biomass, in Methods in Microbiology, Vol. 24 (eds J.R. Norris, D.J. Read and A.K. Varma), Academic Press, London, pp. 77–88.

    Google Scholar 

  • Oberwinkler, F. and Bauer, R. (1989) A taxonomic survey of the gasteroid, auricularioid Heterobasidiomycetes. Sydowia, 41, 224–56.

    Google Scholar 

  • Oberwinkler, F., Bauer, R. and Bandoni, R.J. (1990) Heterogastridiales: a new order of basidiomycetes. Mycologia, 82(1), 48–58.

    Google Scholar 

  • Osswald, W.F., Jehle, J. and Firl, J. (1995) Quantification of fungal infection in plant tissues by determining the glucosamine phenylisothiocyanate derivative using HPLC techniques. Journal of Plant Physiology, 145, 393–7.

    CAS  Google Scholar 

  • Paquin, B., Roewer, I., Wang, Z. and Franz Lang, B. (1995) A robust fungal phylogeny using the mitochondrially encoded NAD5 protein sequence. Canadian Journal of Botany, 73, S180–5.

    Google Scholar 

  • Parkinson, D. and Coleman, D.C. (1991) Methods for assessing microbial populations, activity and biomass. Agriculture, Ecosystems and Environment, 34, 3–33.

    Google Scholar 

  • Perkins, F.O. (1973) Observations of Thrausto-chytriaceous (Phycomycetes) and Labyrinthulid (Rhizopodea) ectoplastomic nets on natural and artificial substrates — an electron microscope study. Canadian Journal of Botany, 51, 485–92.

    Google Scholar 

  • Pietikäinen, J. and Fritze, H. (1995) Clear-cutting and prescribed burning in coniferous forest: comparison of effects on soil fungal and total microbial biomass, respiration activity and nitrification. Soil Biology and Biochemistry, 27, 101–9.

    Google Scholar 

  • Porter, D. (1986) Mycoses of marine organisms: an overview of pathogenic fungi, in The Biology of Marine Fungi (ed. S.T. Moss), Cambridge University Press, Cambridge, pp. 141–53.

    Google Scholar 

  • Porter, D. (1990) Phylum Labyrinthulomycota, in Handbook of Protoctista (eds L. Margulis, J.O. Corliss, M. Melkonian and D.J. Chapman), Jones & Bartlett, Boston, pp. 388–98.

    Google Scholar 

  • Powell, M.J. (1993) Looking at mycology with a Janus face: A glimpse at Chytridiomycetes active in the environment. Mycologia, 85, 1–20.

    Google Scholar 

  • Raghukumar, S. (1985) Enumeration of Thraustochytrids (heterotropic microorganisms) from the Arabian Sea. Mahasagar-Bulletin of the National Institute of Oceanography, 18, 457–65.

    Google Scholar 

  • Raghukumar, S., Sharma, S., Raghukumar, G, Sathe-Pathak, V. and Chandramohan, D. (1994) Thraustochytrid and fungal component of marine detritus. IV. Laboratory studies of decomposition of leaves of the mangrove Rhizophora apiculata Blume. Journal of Experimental Marine Biology and Ecology, 183, 113–31.

    Google Scholar 

  • Rayner, A.D.M. (1992) Introduction, in The Fungal Community, its Organization and Role in the Ecosystem, 2nd edn (eds G.C. Carroll and D.T. Wicklow), Marcel Dekker, New York, pp. xvii–xxiv.

    Google Scholar 

  • Read, D.J. (1990) Mycorrhizas in ecosystems — Nature’s response to the ‘Law of the Minimum’, in Frontiers in Mycology (ed. D.L. Hawksworth), CAB International, Walingford, UK, pp. 101–30.

    Google Scholar 

  • Roff, J.C., Kroetsch, J.T. and Clarke, A.J. (1994) A radiochemical method for secondary production in planktonic Crustacea based on rate of chitin synthesis. Journal of Plankton Research, 16, 961–76.

    CAS  Google Scholar 

  • Ruzicka, S., Norman, M.D.P. and Harris, J.A. (1995) Rapid ultrasonication method to deter-mine ergosterol concentration in soil. Soil Biology and Biochemistry, 27, 1215–17.

    CAS  Google Scholar 

  • Sathe-Pathak, V.S., Raghukumar, C., Raghukumar and Sharma, S. (1993) Thraustochytrid and fungal component of marine detritus. 1 — Field studies on decomposition of the brown alga Sargassum cinereum, Indian Journal of Marine Science, 22,159–67.

    CAS  Google Scholar 

  • Shand, C.A., Cheshire, M.V., Smith, S. et al. (1995) Radiocaesium in an organic soil and the effect of treatment with the fungicide ‘Captan’. Plant and Soil, 170, 315–22.

    CAS  Google Scholar 

  • Singer, R. and Harris, B. (1987) Mushrooms and Truffles, Koeltz Scientific Books, Koenigstein, Germany.

    Google Scholar 

  • Smith, J.E., Berry, D.R. and Kristiansen, B. (eds) (1983) The Filamentous Fungi, Vol. IV, Fungal Technology, Edward Arnold, London.

    Google Scholar 

  • Suberkropp, K. and Weyers, H. (1996) Application of fungal and bacterial production methodologies to decomposing leaves in streams. Applied and Environmental Microbiology, 62, 1610–15.

    PubMed  CAS  Google Scholar 

  • Suberkropp, K, Gessner, M.O. and Chauvet, E. (1993) Comparison of ATP and ergosterol as indicators of fungal biomass associated with decomposing leaves in streams. Applied and Environmental Microbiology, 59, 3367–72.

    PubMed  CAS  Google Scholar 

  • Sutton, B.C. (1980) The Coelomycetes, Commonwealth Mycological Institute, Kew.

    Google Scholar 

  • Swann, E.A. and Taylor, J.W. (1995) Toward a phylogenetic systematics of the Basidimycota: integrating yeasts and filamentous basidiomycetes using 18S rRNA gene sequences. Studies in Mycology, 38, 147–62.

    Google Scholar 

  • Trinci, A.P.J. (1995) Pure and applied mycology. Canadian Journal of Botany, 73(1), S1–14.

    Google Scholar 

  • Tunlid, A. and White, D.C. (1992) Biochemical analysis of biomass, community structure, nutritional status, and metabolic activity of microbial communities in soil. Soil Biochemistry, 7, 229–62.

    CAS  Google Scholar 

  • Ulken, A. (1978) Growth experiments with different isolates of Phlyctochytrium mangrovis (Phycomycetes), Veröffentlichen Institut Meeresforschung Bremerhaven, 17, 21–31.

    Google Scholar 

  • Ulken, A. (1990) Marine Thraustochytrids and Chytridiomycetes in the North Sea area and in selected other regions. Bibliotheca Mycologica, 137, 1–93.

    Google Scholar 

  • van der Rest, M., Kamminga, A.H., Nakano, A. et al. (1995) The plasma membrane of Saccharomyces cerevisae: structure, function, and biogenesis. Microbiological Reviews, 59, 304–22.

    PubMed  Google Scholar 

  • Van Gestel, J., Van Leemput, L. and Marichal, P. (1986) Quantitative aspects of the antisporulant activity of imazalil, an agricultural fungicide. Drug Development Research, 8, 325–31.

    Google Scholar 

  • Wainwright, M. (1992) The impact of fungi on environmental biogeochemistry, in The Fungal Community, Its Organization and Role in the Ecosystem, 2nd edn (eds G.C. Carroll and D.T. Wicklow), Marcel Dekker, New York, pp. 601–18.

    Google Scholar 

  • Weete, J.D. (1989) Structure and function of sterols in fungi. Advances in Lipid Research, 23, 115–67.

    CAS  Google Scholar 

  • Weete, J.D., Fuller, M.S., Huang, M.Q. and Gandhi, S. (1989) Fatty acids and sterols of selected hyphochytriomycetes and chytridiomycetes. Experimental Mycology, 13, 183–95.

    CAS  Google Scholar 

  • Weising, K., Nybom, H., Wolff, K. and Meyer, W. (1995) DMA Fingerprinting in Plants and Fungi, CRC Press, Boca Raton, FL.

    Google Scholar 

  • Wells, K. (1995) Jelly fungi, then and now! Mycologia, 87, 18–48.

    Google Scholar 

  • Wicklow, D.T. and Söderström, B. (eds) (1997) The Mycota, Vol. IV, Environmental and Microbial Relationships, Springer-Verlag, New York.

    Google Scholar 

  • Yarrow, D. (1997) Isolation, maintenance and identification of yeasts, in The Yeasts, A Taxonomic Study, 4th edn (eds C.P. Kurtzman and J.W. Fell), Elsevier, Amsterdam.

    Google Scholar 

  • Young, J.C. (1995) Microwave-assisted extraction of the fungal metabolite ergosterol and total fatty acids. Journal of Agricultural and Food Chemistry, 43, 2904–10.

    CAS  Google Scholar 

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Fell, J.W., Newell, S.Y. (1998). Biochemical and Molecular Methods for the Study of Marine Fungi. In: Cooksey, K.E. (eds) Molecular Approaches to the Study of the Ocean. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-4928-0_12

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