Abstract
Drought and salinity are the main factors limiting plant growth and productivity. With the effects of global warming, severe drought episodes are expected to be widespread, which will certainly lead to decrease in crop production. Therefore, understanding plants’ response to drought and salinity stresses is more urgent than ever to reveal molecular mechanisms behind the natural tolerance which, then, can be used in the generation of stress-tolerant crop species. Barley stands out as the most salinity and drought-tolerant crop inPoaceae family with its wide range of wild genotypes. Due to its higher tolerance to abiotic and biotic stresses among other crops, it was studied to understand the mechanisms behind the natural tolerance via generation of various genetic resources and databases created by extensive sequence data, microarray studies, next-generation sequencing (NGS), and genetic maps. Large-scale transcriptomic analyses in barley showed that ROS-scavenging enzymes, transcription factors, LEA group proteins, and enzymes coding for osmoprotectants are the prominent groups of genes differentially expressed under salinity and drought stresses. Quantitative real-time PCR was efficiently used to measure transcript levels of stress-related genes under high salt or limited water conditions, allowing the prediction of functional characteristics of these genes according to their expression patterns. Small-scale expression studies also revealed the importance of cell and tissue type expression and mode of the stress treatment. However, although there are numerous candidate barley genes that can be used to develop transgenic crops with higher tolerance to salinity and drought, there are only limited isolation and cloning studies with these genes. We highly recommend more detailed studies on this naturally tolerant crop to be able to generate more drought or salt tolerance species via genetic transformation.
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References
Abebe T, Melmaiee K, Berg V, Wise RP (2010) Drought response in the spikes of barley: gene expression in the lemma, palea, awn, and seed. Funct Integr Genomics 10:191–205
Adem GD, Roy SJ, Zhou M, Bowman JP, Shabala S (2014) Evaluating contribution of ionic, osmotic and oxidative stress components towards salinity tolerance in barley. BMC Plant Biol 14:113
Agarwal PK, Shukla PS, Gupta K, Jha B (2013) Bioengineering for salinity tolerance in plants: state of the art. Mol Biotechnol 54:102–123
Ahmed IM, Cao F, Zhang M, Chen X, Zhang G, Wu F (2013a) Difference in yield and physiological features in response to drought and salinity combined stress during anthesis in Tibetan wild and cultivated barleys. PLoS One 8:e77869
Ahmed IM, Dai H, Zheng W, Cao F, Zhang G, Sun D, Wu F (2013b) Genotypic differences in physiological characteristics in the tolerance to drought and salinity combined stress between Tibetan wild and cultivated barley. Plant Physiol Biochem 63:49–60
Al Abdallat AM, Ayad JY, Abu Elenein JM, Al Ajlouni Z, Harwood WA (2014) Overexpression of the transcription factorHvSNAC1 improves drought tolerance in barley (Hordeum vulgare L.). Mol Breed 33:401–414
Allardyce JA, Rookes JE, Hussain HI, Cahill DM (2013) Transcriptional profiling ofZea mays roots reveals roles for jasmonic acid and terpenoids in resistance againstPhytophthora cinnamomi. Funct Integr Genomics 13:217–228
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11:R106
Apse MP, Sottosanto JB, Blumwald E (2003) Vacuolar cation/H+ exchange, ion homeostasis, and leaf development are altered in a T-DNA insertional mutant ofAtNHX1, theArabidopsis vacuolar Na+/H+ antiporter. Plant J 36:229–239
Araus JL, Cairns JE (2014) Field high-throughput phenotyping: the new crop breeding frontier. Trends Plant Sci 19:52–61
Ashraf M, Foolad MR (2007) Roles of glycine betaine and proline in improving plant abiotic stress resistance. Environ Exp Bot 59:206–216
Atienza SG, Faccioli P, Perrotta G et al (2004) Large scale analysis of transcripts abundance in barley subjected to several single and combined abiotic stress conditions. Plant Sci 167:1359–1365
Babu RC, Zhang J, Blum A, David Ho T-H, Wu R, Nguyen HT (2004)HVA1, a LEA gene from barley confers dehydration tolerance in transgenic rice (Oryza sativa L.) via cell membrane protection. Plant Sci 166:855–862
Badr A, Muller K, Schafer-Pregl R, El Rabey H, Effgen S, Ibrahim HH, Pozzi C, Rohde W, Salamini F (2000) On the origin and domestication history of barley. Mol Biol Evol 17:499–510
Bassil E, Coku A, Blumwald E (2012) Cellular ion homeostasis: emerging roles of intracellular NHX Na+/H+ antiporters in plant growth and development. J Exp Bot 63:5727–5740
Bedada G, Westerbergh A, Müller T, Galkin E, Bdolach E, Moshelion M, Fridman E, Schmidet KJ (2014) Transcriptome sequencing of two wild barley (Hordeum spontaneum L.) ecotypes differentially adapted to drought stress reveals ecotype-specific transcripts. BMC Genomics 15:1–20
Benito B, Haro R, Amtmann A, Cuin TA, Dreyer I (2014) The twins K+ and Na+ in plants. J Plant Physiol 171:723–731
Bhargava S, Sawant K (2013) Drought stress adaptation: metabolic adjustment and regulation of gene expression. Plant Breed 132:21–32
Bonman JM, Bockelman HE, Jackson LF, Steffenson BJ (2005) Disease and insect resistance in cultivated barley accessions from the USDA National Small Grains Collection. Crop Sci 45:1271–1280
Boscari A, Clément M, Volkov V, Golldack D, Hybiak J, Miller AJ, Amtmann A, Fricke W (2009) Potassium channels in barley: cloning, functional characterization and expression analyses in relation to leaf growth and development. Plant Cell Environ 32:1761–1777
Bose J, Rodrigo-Moreno A, Shabala S (2014) ROS homeostasis in halophytes in the context of salinity stress tolerance. J Exp Bot 65:1241–1257
Bot A, Benites J (2005) The importance of soil organic matter, key to drought-resistant soil and sustained food production. FAO Soils Bulletin, Rome
Camilios-Neto D, Bonato P, Wassem R, Brusamarello-Santos LCC, Valdameri G, Donatti L, Faoro H, Weiss VA, Chubatsu LS, OPedrosa F, Souzaet EM (2014) Dual RNA-seq transcriptional analysis of wheat roots colonized byAzospirillum brasilense reveals up-regulation of nutrient acquisition and cell cycle genes. BMC Genomics 15:378
Cattivelli L, Rizza F, Badeck FW, Mazzucotelli E, Mastrangelo AM, Francia E, Marè C, Tondelli A, Stanca AM (2008) Drought tolerance improvement in crop plants: an integrated view from breeding to genomics. Field Crops Res 105:1–14
Checker VG, Chhibbar AK, Khurana P (2012) Stress-inducible expression of barleyHva1 gene in transgenic mulberry displays enhanced tolerance against drought, salinity and cold stress. Transgenic Res 21:939–957
Chen Z, Newman I, Zhou M et al (2005) Screening plants for salt tolerance by measuring K+ flux: a case study for barley. Plant Cell Environ 28:1230–1246
Chen Z, Pottosin II, Cuin TA, Fuglsang AT, Tester M, Jha D, Zepeda-Jazo I, Zhou M, Palmgren MG, Newman IA, Shabala S (2007) Root plasma membrane transporters controlling K+/Na+ homeostasis in salt-stressed barley. Plant Physiol 145:1714–1725
Chen D, Neumann K, Friedel S, Kilian B, Chen M, Altmann T, Klukas C (2014) Dissecting the phenotypic components of crop plant growth and drought responses based on high-throughput image analysis. Plant Cell 26:4636–4655
Choi DW, Close TJ (2000) A newly identified barley gene, Dhn12, encoding a YSK2 DHN, is located on chromosome 6H and has embryo-specific expression. Theor Appl Genet 100:1274–1278
Choi DW, Zhu B, Close TJ (1999) The barley (Hordeum vulgare L.) dehydrin multigene family: sequences, allele types, chromosome assignments, and expression characteristics of 11Dhn genes of cv Dicktoo. Theor Appl Genet 98:1234–1247
Close TJ, Wanamaker SI, Caldo RA, Turner SM, Ashlock DA, Dickerson JA, Wing RA, Muehlbauer GJ, Kleinhofs A, Wise RP (2004) A new resource for cereal genomics: 22K Barley GeneChip comes of age. Plant Physiol 134:960–968
Close TJ et al (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582
Cominelli E, Conti L, Tonelli C, Galbiati M (2013) Challenges and perspectives to improve crop drought and salinity tolerance. N Biotechnol 30:355–361
Cseri A, Cserháti M, von Korff M, Nagy B, Horvath GB, Palagyi A, Pauk J, Dudits D, Törjek O (2011) Allele mining and haplotype discovery in barley candidate genes for drought tolerance. Euphytica 181:341–356
Dai A (2011) Drought under global warming: a review. Wiley Interdiscip Rev Clim Chang 2:45–65
Dai A (2013) Increasing drought under global warming in observations and models. Nat Clim Chang 3:52–58
De Mezer M, Turska-Taraska A, Kaczmarek Z, Glowacka K, Swarcewicz B, Rorat T (2014) Differential physiological and molecular response of barley genotypes to water deficit. Plant Physiol Biochem 80:234–248
Diab AA, Teulat-Merah B, This D, Ozturk NZ, Bensher D, Sorrells ME (2004) Identification of drought-inducible genes and differentially expressed sequence tags in barley. Theor Appl Genet 109:1417–1425
Dolezel J, Greilhuber J, Lucretii S, Meister A, Lysak MA, Nardi L, Obermayer R (1998) Plant genome size estimation by flow cytometry: inter-laboratory comparison. Ann Bot 82:17–26
Dolferus R (2014) To grow and not to grow: a stressful decision for plants. Plant Sci 229:247–261
Dolferus R, Ji X, Richards RA (2011) Abiotic stress and control of grain number in cereals. Plant Sci 181:331–341
Du JB, Yuan S, Chen YE, Sun X, Zhang ZW, Xu F, Yuan M, Shang J, Lin HH (2011) Comparative expression analysis of dehydrins between two barley varieties, wild barley and Tibetan hulless barley associated with different stress resistance. Acta Physiol Plant 33:567–574
Eckardt NA, Berkowitz GA (2011) Functional analysis ofArabidopsis NHX antiporters: the role of the vacuole in cellular turgor and growth. Plant Cell 23:3087–3088
Edwards KD, Bombarely A, Story GW, Allen F, Mueller LA, Coates SA, Jones L (2010) TobEA: an atlas of tobacco gene expression from seed to senescence. BMC Genomics 11:142
Forster BP, Ellis RP, Thomas WT, Newton AC, Tuberose R, This D, el-Enein RA, Bahri MH, Ben Salem M (2000) The development and application of molecular markers for abiotic stress tolerance in barley. J Exp Bot 51:19–27
Gao R, Duan K, Guo G, Du Z, Chen Z, Li L, He T, Lu R, Huang J (2013) Comparative transcriptional profiling of two contrasting barley genotypes under salinity stress during the seedling stage. Int J Genomics 2013:1–19
Garthwaite AJ, von Bothmer R, Colmer TD (2005) Salt tolerance in wildHordeum species is associated with restricted entry of Na+ and Cl− into the shoots. J Exp Bot 56:2365–2378
Godfray HC, Beddington JR, Crute IR (2010) Food security: the challenge of feeding 9 billion people. Science 327:812–818
Godfree RC (2012) The impacts of extreme drought and climate change on plant population dynamics and evolution. In: Neves DF, Sanz JD (eds) Droughts: new research. Nova, New York, pp 189–214
Gosal SS, Wani SH, Kang MS (2009) Biotechnology and drought tolerance. J Crop Improv 23:19–54
Graether SP, Boddington KF (2014) Disorder and function: a review of the dehydrin protein family. Front Plant Sci 5:576
Guo P, Baum M, Grando S, Ceccarelli S, Bai G, Li R, von Korff N, Varshney RK, Graner A, Valkonun J (2009) Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. J Exp Bot 60:3531–3544
Gürel F, Öztürk NZ, Yörük E, Uçarlı C, Poyraz N (2016) Comparison of expression patterns of selected drought-responsive genes in barley (Hordeum vulgare L.) under shock-dehydration and slow drought treatments. Plant Growth Regul 1–11. doi:10.1007/s10725-016-0156-0
Haro R, Banuelos MA, Senn ME, Barrrero-Gil J, Rodriguez-Navarro A (2005) HKT1 mediates sodium uniport in roots Pitfalls in the expression ofHKT1 in yeast. Plant Physiol 139:1495–1506
Hauser F, Horie T (2010) A conserved primary salt tolerance mechanism mediated by HKT transporters: a mechanism for sodium exclusion and maintenance of high K(+)/Na(+) ratio in leaves during salinity stress. Plant Cell Environ 33:552–565
Hawkins RD, Hon GC, Ren B (2010) Next-generation genomics: an integrative approach. Nat Rev Genet 11:476–486
Hayes PM, Castro A, Marquez-Cedillo L, Corey A (2003) Genetic diversity for quantitatively inherited agronomic and malting quality traits. In: von Bothmer R, van Hintum T, Knüpffer H, Sato K (eds) Diversity in barley (Hordeum vulgare) developments in plant genetics and breeding. Elsevier Science, Amsterdam, pp 201–226
Hincha DK, Thalhammer A (2012) LEA proteins: IDPs with versatile functions in cellular dehydration tolerance. Biochem Soc Trans 40:1000–1003
Hoagland DR, Arnon DI (1950) The water culture method for growing plants without soil. University of California Agricultural Experiment Station, Berkley, Circular 347
Hong B, Barg R, Ho T-HD (1992) Developmental and organ-specific expression of an ABA- and stress-induced protein in barley. Plant Mol Biol 18:663–674
Honsdorf N, March TJ, Berger B, Tester M, Pillen K (2013) High-throughput phenotyping to detect drought tolerance QTL in wild barley introgression lines. PLoS One 9:e97047
Hu XJ, Zhang ZB, Xu P (2010) Multifunctional genes: the cross-talk among the regulation networks of abiotic stress responses. Biol Plant 54:213–223
Huang S, Spielmeyer W, Lagudah ES, Munns R (2008) Comparative mapping ofHKT genes in wheat, barley, and rice, key determinants of Na+ transport, and salt tolerance. J Exp Bot 59:927–937
Jain M (2011) A next-generation approach to the characterization of a non-model plant transcriptome. Curr Sci 101:1435–1439
James VA, Neibaur I, Altpeter F (2008) Stress inducible expression of the DREB1A transcription factor from xeric, Hordeum spontaneum L. in turf and forage grass (Paspalum notatum Flugge) enhances abiotic stress tolerance. Transgenic Res 17:93–104
Jung J, Won SY, Suh SC, Kim H, Wing R, Jeong Y, Hwang I, Kim M (2007) The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance inArabidopsis. Planta 225:575–588
Kapazoglou A, Drosou V, Argiriou A, Tsaftaris AS (2013) The study of a barley epigenetic regulator, HvDME, in seed development and under drought. BMC Plant Biol 13:172
Karami A, Shahbazi M, Niknam V, Shobbar ZS, Tafreshi RS, Abedini R, Mabood HE (2013) Expression analysis of dehydrin multigene family across tolerant and susceptible barley (Hordeum vulgare L.) genotypes in response to terminal drought stress. Acta Physiol Plant 35:2289–2297
Kasuga M, Liu Q, Miura S, Yamaguchi-Shinozaki K, Shinozaki K (1999) Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor. Nat Biotechnol 17:287–291
Kavi Kishor PB, Hong Z, Miao GH, Hu CAA, Verma DPS (1995) Over-expression of-pyrroline-5-carboxylate synthetase increases proline production and confers osmotolerance in transgenic plants. Plant Physiol 25:1387–1394
Kilian B, Martin W, Salamini F (2010) Genetic diversity, evolution and domestication of wheat and barley in the Fertile Crescent. In: Glaubrecht M (ed) Evolution in action. Springer, Berlin, pp 137–166
Kilian J, Peschke F, Berendzen KW, Harter K, Wanke D (2012) Prerequisites, performance and profits of transcriptional profiling the abiotic stress response. Biochim Biophys Acta 1819:166–175
Knüpffer H, Terentyeva I, Hammer K et al (2003) Ecogeographical diversity—a Vavilovian approach. In: von Bothmer R, van Hintum T, Knüpffer H, Sato K (eds) Diversity in barley (Hordeum vulgare). Elsevier, Amsterdam, pp 53–76
Kudla J, Batistic O, Hashimoto K (2010) Calcium signals: the lead currency of plant information processing. Plant Cell 22:541–563
Kumar S, Wang Z, Banks TW, Jordan MC, McCallum BD, Cloutier S (2014)Lr1-mediated leaf rust resistance pathways of transgenic wheat lines revealed by a gene expression study using the Affymetrix GeneChip® Wheat Genome Array. Mol Breed 34:127–141
Langridge P, Fleury D (2011) Making the most of “omics” for crop breeding. Trends Biotechnol 29:33–40
Läuchli A, Grattan SR (2007) Plant growth and development under salinity stress. In: Jenks MA, Hasegawa PM, Jain SM (eds) Advances in molecular breeding toward drought and salt tolerant crops. Springer, Dordrecht, pp 285–315
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754–1760
Li H, Guo Q, Lan X, Zhou Q, Wei N (2014) Comparative expression analysis of fiveWRKY genes from Tibetan hulless barley under various abiotic stresses between drought-resistant and sensitive genotype. Acta Physiol Plant 36:963–973
Malatrasi M, Close TJ, Marmirolli N (2002) Identification and mapping of putative stress response regulator gene in barley. Plant Mol Biol 50:143–152
Mangelsen E, Kilian J, Berendzen KW, Kolukisaoglu UH, Harter K, Jansson C, Wanke D (2008) Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots. BMC Genomics 9:194
Mare C, Mazzucotelli E, Crosatti C, Francia E, Stanca AM, Cattivelli L (2004) Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley. Plant Mol Biol 55:399–416
Maruyama K, Todaka D, Mizoi J, Yoshida T, Kidokoro S, Matsukura S, Takasaki H, Sakurai T, Yamamoto YY, Yoshiwara K, Kojima M, Sakakibara H, Shinozaki K, Yamaguchi-Shinozaki K (2012) Identification of cis-acting promoter elements in cold- and dehydration- induced transcriptional pathways inArabidopsis, rice, and soybean. DNA Res 19:37–49
Mayer KFX et al (2011) Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell 23:1249–1263
Mian A, Oomen RJFJ, Isayenkov S, Sentenac H, Maathuis FJM, Very AA (2011) Over-expression of an Na+-and K+-permeable HKT transporter in barley improves salt tolerance. Plant J 68:468–479
Miller GAD, Suzuki N, Ciftci-Yilmaz S et al (2010) Reactive oxygen species homeostasis and signalling during drought and salinity stresses. Plant Cell Environ 33:453–467
Mir RR, Zaman-Allah M, Sreenivasulu N, Trethowan R (2012) Integrated genomics, physiology and breeding approaches for improving drought tolerance in crops. Theor Appl Genet 125:625–645
Mirouze M, Paszkowski J (2011) Epigenetic contribution to stress adaptation in plants. Curr Opin Plant Biol 14:267–274
Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K (2012) AP2/ERF family transcription factors in plant abiotic stress responses. Biochim Biophys Acta 1819:86–96
Mochida K, Uehara-Yamaguchi Y, Yoshida T, Sakurai T, Shinozaki K (2011) Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops. Plant Cell Physiol 52:785–803
Morran S, Eini O, Pyvovarenko T, Parent B, Singh R, Ismagul A, Eliby S, Shirley N, Langridge P, Lopato S (2011) Improvement of stress tolerance of wheat and barley by modulation of expression of DREB/CBF factors. Plant Biotechnol J 9:230–249
Morrell PL, Clegg MT (2007) Genetic evidence for a second domestication of barley (Hordeum vulgare) east of the Fertile Crescent. Proc Natl Acad Sci U S A 104:3289–3294
Morrell PL, Gonzales AM, Meyer KK, Clegg MT (2014) Resequencing data indicate a modest effect of domestication on diversity in barley: a cultigen with multiple origins. J Hered 105:253–264
Mrízová K, Holasková E, Öz MT, Jiskrová E, Frébort I, Galuszka P (2014) Transgenic barley: a prospective tool for biotechnology and agriculture. Biotechnol Adv 32:137–157
Munns R, Tester M (2008) Mechanisms of salinity tolerance. Annu Rev Plant Biol 59:651–681
Nevo E (1992) Origin, evolution, population genetics and resources for breeding of wild barley,Hordeum spontaneum, in the Fertile Crescent. In: Shewry PR (ed) Barley: genetics, biochemistry, molecular biology and biotechnology. CAB International, Wallingford, UK, pp 19–43
Nevo E, Chen G (2010) Drought and salt tolerances in wild relatives for wheat and barley improvement. Plant Cell Environ 33:670–685
Oh SJ, Kwon CW, Choi DW, Song SI, Kim JK (2007) Expression of barleyHvCBF4 enhances tolerance to abiotic stress in transgenic rice. Plant Biotechnol J 5:646–656
Osakabe Y, Osakabe K, Shinozaki K, Tran LSP (2014) Response of plants to water stress. Front Plant Sci 5:86
Ozturk ZN, Talame V, Deyhoyos M, Deyholos M, Michalowski CB, Galbraith DW, Gozukirmizi N, Tuberosa R, Bohnert HJ (2002) Monitoring large-scale changes in transcript abundance in drought- and salt-stressed barley. Plant Mol Biol 48:551–573
Papaefthimiou D, Tsaftaris AS (2012) Significant induction by drought of HvPKDM7-1, a gene encoding a jumonji-like histone demethylase homologue in barley (H. vulgare). Acta Physiol Plant 34:1187–1198
Qian G, Liu Y, Ao D, Yang F, Yu M (2008) Differential expression of dehydrin genes in hull-less barley (Hordeum vulgare ssp.vulgare) depending on duration of dehydration stress. Can J Plant Sci 88:899–906
Qiu L, Wu DZ, Ali S, Cai S, Dai F, Jin X, Wu F, Zhang G (2011) Evaluation of salinity tolerance and analysis of allelic function ofHvHKT1 andHvHKT2 in Tibetan wild barley. Theor Appl Genet 122:695–703
Rapacz M, Koscielniak J, Jurczyk B, Adamska A, Wojcik M (2010) Different patterns of physiological and molecular response to drought in seedlings of malt and feed-type barleys (Hordeum vulgare). J Agron Crop Sci 196:9–19
Reddy VS, Reddy ASN (2004) Proteomics of calcium-signaling components in plants. Phytochemistry 65:1745–1776
Reshetova P, Smilde AK, van Kampen AH, Westerhuis JA (2014) Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data. BMC Syst Biol 8(Suppl 2):S2
Richards CL, Rosas U, Banta J, Bhambhra N, Purugganan MD (2012) Genome-wide patterns ofArabidopsis gene expression in nature. PLoS Genet 8:e1002662
Rodriguez EM, Svenson JT, Malatrasi M, Choi DW, Close TJ (2005) BarleyDhn13 encodes a KS-type dehydrin with constitutive and stress responsive expression. Theor Appl Genet 110:852–858
Rodríguez-Rosales MP, Gálvez FJ, Huertas R, Aranda MN, Baghour M, Cagnac O, Venema K (2009) Plant NHX cation/proton antiporters. Plant Signal Behav 4:265–276
Roslyakova TV, Molchan OV, Vasekina AV, Lazareva EM, Sokolik AI, Yurin VM, de Boer AH, Babakov AV (2011) Salt tolerance of barley: relations between expression of isoforms of vacuolar Na+/H+-antiporter and22Na+ accumulation. Russ J Plant Physiol 58:24–35
Roxas VP, Smith RK, Allen ER, Allen RD (1997) Overexpression of glutathione S-transferase/ glutathione peroxidase enhances the growth of transgenic tobacco seedlings during stress. Nat Biotechnol 15:988–991
Roy SJ, Huang W, Wang XJ, Evrard A, Schmöckel SM, Zafar ZU, Tester M (2013) A novel protein kinase involved in Na+ exclusion revealed from positional cloning. Plant Cell Environ 36:553–568
Roy SJ, Negrão S, Tester M (2014) Salt resistant crop plants. Curr Opin Biotechnol 26:115–124
Rozema J, Flowers T (2008) Crops for a salinized world. Science 322:1478–1480
Rushton PJ, Somssich IE, Ringler P, Shen QJ (2010) WRKY transcription factors. Trends Plant Sci 15:247–258
Schilling RK, Marschner P, Shavrukov Y, Berger B, Tester M, Roy SJ, Plett DC (2014) Expression of theArabidopsis vacuolar H+-pyrophosphatase gene (AVP1) improves the shoot biomass of transgenic barley and increases grain yield in a saline field. Plant Biotechnol J 12:378–386
Seki M, Okamoto M, Matsui A, Kim JM, Kurihara Y, Ishida J, Morosawa T, Kawashima M, To TK, Shinozaki K (2009) Microarray analysis for studying the abiotic stress responses in plants. In: Jain SM, Brar DS (eds) Molecular techniques in crop improvement. Springer, Amsterdam, pp 333–355
Shabala S, Shabala S, Cuin TA, Pang J, Percey W, Chen Z, Conn S, Eing C, Wegner LH (2010) Xylem ionic relations and salinity tolerance in barley. Plant J 61:839–853
Shanker AK, Maheswari M, Yadav SK, Desai S, Bhanu D, Attal NB, Venkateswarlu B (2014) Drought stress responses in crops. Funct Integr Genomics 14:11–22
Shelden MC, Roessner U (2013) Advances in functional genomics for investigating salinity stress tolerance mechanisms in cereals. Front Plant Sci 4:123
Skirycz A, Inze D (2010) More from less: plant growth under limited water. Curr Opin Biotech 21:197–203
Steuernagel B, Taudien S, Gundlach H, Seidel M, Ariyadasa R, Schulte D, Petzold A, Felder M, Graner A, Scholz U, Mayer KF, Platzer M, Stein N (2009) De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley. BMC Genomics 10:547
Suprunova T, Krugman T, Fahima T, Chen G, Shams I, Korol A, Nevo E (2004) Differential expression of dehydrin genes in wild barley,Hordeum spontaneum, associated with resistance to water deficit. Plant Cell Environ 27:1297–1308
Talame V, Ozturk ZN, Bohnert HJ (2007) Barley transcript profiles under dehydration shock and drought stress treatments: a comparative analysis. J Exp Bot 58:229–240
Tester M, Langridge P (2010) Breeding technologies to increase crop production in a changing world. Science 327:818–822
The International Barley Genome Sequencing Consortium (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature 491:711–716
Tommasini T, Svensson JT, Rodriguez EM, Wahid A, Malatrasi M, Kato K, Wanamaker S, Resnik J, Close TJ (2008) Dehydrin gene expression provides an indicator of low temperature and drought stress: transcriptome-based analysis of barley (Hordeum vulgare L.). Funct Integr Genomics 8:387–405
Trenberth KE, Dai A, van der Schrier G, Jones PD, Barichivich J, Briffa KR, Sheffield J (2014) Global warming and changes in drought. Nat Climate Change 4:17–22
Ueda A, Shi W, Nakamura T, Takabe T (2002) Analysis of salt-inducible genes in barley roots by differential display. J Plant Res 115:119–130
Ueda A, Kathiresan A, Inada M, Narita Y, Nakamura T, Shi W, Takabe T, Bennett J (2004) Osmotic stress in barley regulates expression of a different set of genes than salt stress does. J Exp Bot 55:2213–2218
Ullrich SE (2011) Significance, adaptation, production, and trade of barley. In: Ullrich SE (ed) Barley production, improvement, and uses. Wiley, Ames, pp 3–13
Van Gool D, Vernon L (2006) Potential impacts of climate change on agricultural land use suitability: barley. Report No. 302, Department of Agriculture, Western Australia
Von Bothmer R (1992) The wild species ofHordeum: relationships and potential use for improvement of cultivated barley. In: Shewry PR (ed) Barley: genetics, biochemistry, molecular biology and biotechnology. CAB International, Wallingford, Oxon, pp 3–18
Walia H, Wilson C, Condamine P, Liu X, Ismail AM, Wanamaker SI, Mandal J, Xu J, Cui X, Close TJ (2005) Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage. Plant Physiol 139:822–835
Walia H, Wilson C, Wahid A, Condamine P, Cui X, Close TJ (2006) Expression analysis of barley (Hordeum vulgare L.) during salinity stress. Funct Integr Genomics 6:143–156
Wang FZ, Wang QB, Kwon SY, Kwak SS, Su WA (2005) Enhanced drought tolerance of transgenic rice plants expressing a pea manganese superoxide dismutase. J Plant Physiol 162:465–472
Wang Z, Gerstein M, Snyder M (2009) RNA-seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10:57–63
Weinl S, Kudla J (2009) The CBL-CIPK Ca2+-decoding signaling network: function and perspectives. New Phytol 184:517–528
Wicker T, Taudien S, Houben A, Keller B, Graner A, Platzer M, Stein N (2009) A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley. Plant J 59:712–722
Witzel K, Weidner A, Surabhi GK, Börner A, Mock HP (2009) Salt stress-induced alterations in the root proteome of barley genotypes with contrasting response towards salinity. J Exp Bot 60:3545–3557
Wojcik-Jagla M, Rapacz M, Barcik W, Janowiak F (2012) Differential regulation of barley (Hordeum distichon)HVA1 andSRG6 transcript accumulation during the induction of soil and leaf water deficit. Acta Physiol Plant 34:2069–2078
Wu D, Shen Q, Cai S, Chen ZH, Dai F, Zhang G (2013) Ionomic responses and correlations between elements and metabolites under salt stress in wild and cultivated barley. Plant Cell Physiol 54:1976–1988
Xu WF, Shi WM, Ueda A, Takabe T (2008) Mechanisms of salt tolerance in transgenicArabidopsis thaliana carrying a peroxisomal ascorbate peroxidase gene from barley. Pedosphere 18:486–495
Xu ZS, Ni ZY, Li ZY, Li LC, Chen M, Gao DY, Yu XD, Liu P, Ma YZ (2009) Isolation and functional characterization ofHvDREB1, a gene encoding a dehydration-responsive element binding protein inHordeum vulgare. J Plant Res 122:121–130
Xu H, Gao Y, Wang J (2012) Transcriptomic analysis of rice (Oryza sativa) developing embryos using the RNA-Seq technique. PLoS One 7:e30646
Xue GP, Loveridge CW (2004)HvDRF1 is involved in abscisic acid-mediated gene regulation in barley and produces two forms of AP2 transcriptional activators, interacting preferably with a CT-rich element. Plant J 37:326–339
Yu Q, An L, Li W (2014) The CBL-CIPK network mediates different signaling pathways in plants. Plant Cell Rep 33:203–214
Zhao J, Sun H, Dai H, Zhang G, Wu F (2010) Difference in response to drought stress among Tibet wild barley genotypes. Euphytica 172:395–403
Zhu JK (2003) Regulation of ion homeostasis under salt stress. Curr Opin Plant Biol 6:441–445
Ziemann M, Kamboj A, Hove RM, Loveridge S, El Osta A, Bhave M (2013) Analysis of the barley leaf transcriptome under salinity stress using mRNA-Seq. Acta Physiol Plant 35:1915–1924
Zohary D, Hopf M (1993) Domestication of plants in the Old World. The origin and spread of cultivated plants in West Asia, Europe and the Nile Valley. Clarendon Press, Oxford
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This research was supported by Scientific Research Projects Coordination Unit of Istanbul University, project BAP 4712.
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Gürel, F., Öztürk, N.Z., Uçarlı, C. (2016). Transcriptomic Responses of Barley (Hordeum vulgare L.) to Drought and Salinity. In: Hakeem, K., Tombuloğlu, H., Tombuloğlu, G. (eds) Plant Omics: Trends and Applications. Springer, Cham. https://doi.org/10.1007/978-3-319-31703-8_7
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