Abstract
Restriction enzyme mediated integration (REMI) consists of a PEG or electroporation based transformation protocol in the presence of a restriction enzyme. In general, REMI results in increased transformation efficiency and more single locus integrations. This has made REMI a valuable tool for gene tagging and functional genomics in fungi. The mechanism of REMI, its use, and its alternatives are discussed.
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Notes
- 1.
A detailed protocol on TAIL-PCR can be found in Chap. 46 of this volume
References
Aichinger C, Hansson K, Eichhorn H, Lessing F, Mannhaupt G, Mewes W, Kahmann R (2003) Identification of plant-regulated genes in Ustilago maydis by enhancer-trapping mutagenesis. Mol Genet Genomics 270(4):303–314
Akamatsu H, Itoh Y, Kodama M, Otani H, Kohmoto K (1997) AAL-toxin-deficient mutants of Alternaria alternata tomato pathotype by restriction enzyme-mediated integration. Phytopathology 87(9):967–972
Balhadère PV, Foster AJ, Talbot NJ (1999) Identification of pathogenicity mutants of the rice blast fungus Magnaporthe grisea by insertional mutagenesis. Mol Plant Microbe Interact 12(2):129–142
Blaise F, Rémy E, Meyer M, Zhou L, Narcy J, Roux J, Balesdent M, Rouxel T (2007) A critical assessment of Agrobacterium tumefaciens-mediated transformation as a tool for pathogenicity gene discovery in the phytopathogenic fungus Leptosphaeria maculans. Fungal Genet Biol 44(2):123–138
Bölker M, Böhnert HU, Braun KH, Görl J, Kahmann R (1995) Tagging pathogenicity genes in Ustilago maydis by restriction enzyme-mediated integration (REMI). Mol Gen Genet 248(5):547–552
Bowyer P, Mosquera J, Anderson M, Birch M, Bromley M, Denning DW (2012) Identification of novel genes conferring altered azole susceptibility in Aspergillus fumigatus. FEMS Microbiol Lett 332(1):10–19
Brown DH, Slobodkin IV, Kumamoto CA (1996) Stable transformation and regulated expression of an inducible reporter construct in Candida albicans using restriction enzyme-mediated integration. Mol Gen Genet 251(1):75–80
Brown JS, Aufauvre-Brown A, Holden DW (1998) Insertional mutagenesis of Aspergillus fumigatus. Mol Gen Genet 259(3):327–335
Brown DH Jr, Giusani AD, Chen X, Kumamoto CA (1999) Filamentous growth of Candida albicans in response to physical environmental cues and its regulation by the unique CZF1 gene. Mol Microbiol 34(4):651–662
Bundock P, den Dulk-Ras A, Beijersbergen A, Hooykaas PJ (1995) Trans-kingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae. EMBO J 14(13):3206–3214
Busch S, Eckert SE, Krappmann S, Braus GH (2003) The COP9 signalosome is an essential regulator of development in the filamentous fungus Aspergillus nidulans. Mol Microbiol 49(3):717–730
Chan CY, Kiechle M, Manivasakam P, Schiestl RH (2007) Ionizing radiation and restriction enzymes induce microhomology-mediated illegitimate recombination in Saccharomyces cerevisiae. Nucleic Acids Res 35(15):5051–5059
Chen X, Kumamoto CA (2006) A conserved G protein (Drg1p) plays a role in regulation of invasive filamentation in Candida albicans. Microbiology 152(Pt 12):3691–3700
Chen H, Cao L, Dekkers KL, Rollins JA, Ko NJ, Timmer L, Chung K (2005) A gene with domains related to transcription regulation is required for pathogenicity in Colletotrichum acutatum causing Key lime anthracnose. Mol Plant Pathol 6(5):513–525
Cho JY, Jeffries TW (1998) Pichia stipitis genes for alcohol dehydrogenase with fermentative and respiratory functions. Appl Environ Microbiol 64(4):1350–1358
Choi YE, Brown JA, Williams CB, Canales LL, Shim WB (2008) GAC1, a gene encoding a putative GTPase-activating protein, regulates bikaverin biosynthesis in Fusarium verticillioides. Mycologia 100(5):701–709
Chung K, Shilts T, Li W, Timmer L (2002) Engineering a genetic transformation system for Colletotrichum acutatum, the causal fungus of lime anthracnose and postbloom fruit drop of citrus. FEMS Microbiol Lett 213(1):33–39
Chung K, Ehrenshaft M, Wetzel D, Daub M (2003) Cercosporin-deficient mutants by plasmid tagging in the asexual fungus Cercospora nicotianae. Mol Genet Genomics 270(2):103–113
Ciccia A, Elledge SJ (2010) The DNA damage response: making it safe to play with knives. Mol Cell 40(2):179–204
Combier J, Melayah D, Raffier C, Pépin R, Marmeisse R, Gay G (2004) Nonmycorrhizal (Myc) mutants of Hebeloma cylindrosporum obtained through insertional mutagenesis. Mol Plant Microbe Interact 17(9):1029–1038
Couto CA, Wang HY, Green JC, Kiely R, Siddaway R, Borer C, Pears CJ, Lakin ND (2011) PARP regulates nonhomologous end joining through retention of Ku at double-strand breaks. J Cell Biol 194(3):367–375
Cummings WJ, Celerin M, Crodian J, Brunick LK, Zolan ME (1999) Insertional mutagenesis in Coprinus cinereus: use of a dominant selectable marker to generate tagged, sporulation-defective mutants. Curr Genet 36(6):371–382
Daboussi M, Capy P (2003) Transposable elements in filamentous fungi. Annu Rev Microbiol 57(1):275–299
Daley JM, Palmbos PL, Wu D, Wilson TE (2005) Nonhomologous end joining in yeast. Annu Rev Genet 39:431–451
de Bekker C, Bruning O, Jonker MJ, Breit TM, Wosten HA (2011) Single cell transcriptomics of neighboring hyphae of Aspergillus niger. Genome Biol 12(8):R71-2011-12-8-r71
de Groot MJ, Bundock P, Hooykaas PJ, Beijersbergen AG (1998) Agrobacterium tumefaciens-mediated transformation of filamentous fungi. Nat Biotechnol 16(9):839–842
De Guido M, Pollastro S, Carlucci A, Carlucci R, Faretra F (2003) Phomopsis viticola is easily transformed with hph and Bmlr genes. J Plant Pathol 85(1):43–52
De Jong JF, Ohm RA, De Bekker C, Wösten HA, Lugones LG (2010) Inactivation of ku80 in the mushroom‐forming fungus Schizophyllum commune increases the relative incidence of homologous recombination. FEMS Microbiol Lett 310(1):91–95
De Souza C, Goldman MS, Goldman G (2000) Tagging of genes involved in multidrug resistance in Aspergillus nidulans. Mol Gen Genet 263(4):702–711
Deriano L, Roth DB (2013) Modernizing the nonhomologous end-joining repertoire: alternative and classical NHEJ share the stage. Annu Rev Genet 47:433–455
Dmytruk KV, Voronovsky AY, Sibirny AA (2006) Insertion mutagenesis of the yeast Candida famata (Debaryomyces hansenii) by random integration of linear DNA fragments. Curr Genet 50(3):183–191
Dunlap JC, Borkovich KA, Henn MR, Turner GE, Sachs MS, Glass NL, McCluskey K, Plamann M, Galagan JE, Birren BW (2007) Enabling a community to dissect an organism: overview of the Neurospora functional genomics project. Adv Genet 57:49–96
Epstein L, Lusnak K, Kaur S (1998) Transformation-mediated developmental mutants of Glomerella graminicola (Colletotrichum graminicola). Fungal Genet Biol 23(2):189–203
Farre J, Vidal J, Subramani S (2007) A cytoplasm to vacuole targeting pathway in P. pastoris. Autophagy 3(3):230
Fey P, Cox EC (1997) Gene trapping with GFP: the isolation of developmental mutants in the slime mold Polysphondylium. Curr Biol 7(11):909–912
Fincham JR (1989) Transformation in fungi. Microbiol Rev 53(1):148–170
Fujimoto D, Shi Y, Christian D, Mantanguihan J, Leung H (2002) Tagging quantitative loci controlling pathogenicity in Magnaporthe grisea by insertional mutagenesis. Physiol Mol Plant Pathol 61(2):77–88
Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S, Dow S, Lucau-Danila A, Anderson K, Andre B (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418(6896):387–391
Granado JD, Kertesz-Chaloupková K, Aebi M, Kües U (1997) Restriction enzyme-mediated DNA integration in Coprinus cinereus. Mol Gen Genet 256(1):28–36
Han Y, Lee T, Han K, Yun S, Lee Y (2004) Functional analysis of the homoserine O-acetyltransferase gene and its identification as a selectable marker in Gibberella zeae. Curr Genet 46(4):205–212
Hecht SM (2000) Bleomycin: new perspectives on the mechanism of action 1. J Nat Prod 63(1):158–168
Hirano T, Sato T, Yaegashi K, Enei H (2000) Efficient transformation of the edible basidiomycete Lentinus edodes with a vector using a glyceraldehyde-3-phosphate dehydrogenase promoter to hygromycin B resistance. Mol Gen Genet 263(6):1047–1052
Horowitz S, Yarden O, Zveibil A, Freeman S (2004) Development of a robust screening method for pathogenicity of Colletotrichum spp. on strawberry seedlings enabling forward genetic studies. Plant Dis 88(8):845–851
Hsu DW, Kiely R, Couto CA, Wang HY, Hudson JJ, Borer C, Pears CJ, Lakin ND (2011) DNA double-strand break repair pathway choice in Dictyostelium. J Cell Sci 124(Pt 10):1655–1663
Idnurm A, Howlett BJ (2002) Isocitrate lyase is essential for pathogenicity of the fungus Leptosphaeria maculans to canola (Brassica napus). Eukaryot Cell 1(5):719–724
Idnurm A, Howlett BJ (2003) Analysis of loss of pathogenicity mutants reveals that repeat-induced point mutations can occur in the Dothideomycete Leptosphaeria maculans. Fungal Genet Biol 39(1):31–37
Inada K, Morimoto Y, Arima T, Murata Y, Kamada T (2001) The clp1 gene of the mushroom Coprinus cinereus is essential for A-regulated sexual development. Genetics 157(1):133–140
Inoue l, Ohara T, Namiki F, Tsuge T (2001) Isolation of pathogenicity mutants of Fusarium oxysporum f. sp. melonis by insertional mutagenesis. J Gen Plant Pathol 67(3):191–199
Irie T, Honda Y, Hirano T, Sato T, Enei H, Watanabe T, Kuwahara M (2001) Stable transformation of Pleurotus ostreatus to hygromycin B resistance using Lentinus edodes GPD expression signals. Appl Microbiol Biotechnol 56(5–6):707–709
Itoh Y, Scott B (1997) Effect of de-phosphorylation of linearized pAN7-1 and of addition of restriction enzyme on plasmid integration in Penicillium paxilli. Curr Genet 32(2):147–151
Jeon J, Park S, Chi M, Choi J, Park J, Rho H, Kim S, Goh J, Yoo S, Choi J (2007) Genome-wide functional analysis of pathogenicity genes in the rice blast fungus. Nat Genet 39(4):561–565
Jiang Q, Ying S, Feng M (2007) Enhanced frequency of Beauveria bassiana blastospore transformation by restriction enzyme-mediated integration and electroporation. J Microbiol Methods 69(3):512–517
Jianping Z, Guifang D, Kai Z, Yongjun Z, Yongliang L, Liuqing Y (2012) Screening and identification of insertion mutants from Bipolaris eleusines by mutagenesis based on restriction enzyme‐mediated integration. FEMS Microbiol Lett 330(2):90–97
Jin X, Ming-He M, Wei Z, Xiao-Wei H, Ke-Qin Z (2005a) Transformation and mutagenesis of the nematode-trapping fungus Monacrosporium sphaeroides by restriction enzyme-mediated integration (REMI). J Microbiol 43(5):417
Jin X, Ming-He M, Xiao-Wei H, Ke-Qin Z (2005b) Improvement on genetic transformation in the nematode-trapping fungus Arthrobotrys oligospora and its quantification on dung samples. Mycopathologia 159(4):533–538
Kahmann R, Basse C (1999) REMI (restriction enzyme mediated integration) and its impact on the isolation of pathogenicity genes in fungi attacking plants. Eur J Plant Pathol 105(3):221–229
Kaufman G, Horwitz BA, Hadar R, Ullmann Y, Berdicevsky I (2004) Green fluorescent protein (GFP) as a vital marker for pathogenic development of the dermatophyte Trichophyton mentagrophytes. Microbiology 150(Pt 8):2785–2790
Kawabe M, Mizutani K, Yoshida T, Teraoka T, Yoneyama K, Yamaguchi I, Arie T (2004) Cloning of the pathogenicity-related gene FPD1 in Fusarium oxysporum f. sp. lycopersici. J Gen Plant Pathol 70(1):16–20
Keith R, GRIGG GW, WARING MJ (1987) Sequence-selective binding of phleomycin to DNA. Biochem J 243:847–851
Kim K, Leem Y, Kim K, Kim K, Choi HT (2002) Transformation of the medicinal basidiomycete Trametes versicolor to hygromycin B resistance by restriction enzyme mediated integration. FEMS Microbiol Lett 209(2):273–276
Kim S, Song J, Choi HT (2004) Genetic transformation and mutant isolation in Ganoderma lucidum by restriction enzyme‐mediated integration. FEMS Microbiol Lett 233(2):201–204
Kim J, Myong K, Shim W, Yun S, Lee Y (2007) Functional characterization of acetylglutamate synthase and phosphoribosylamine-glycine ligase genes in Gibberella zeae. Curr Genet 51(2):99–108
Kimura A, Takano Y, Furusawa I, Okuno T (2001) Peroxisomal metabolic function is required for appres-sorium-mediated plant infection by Colletotrichum lagenarium. Plant Cell 13(8):1945–1957
Krappmann S (2007) Gene targeting in filamentous fungi: the benefits of impaired repair. Fungal Biol Rev 21(1):25–29
Kuspa A, Loomis WF (1992) Tagging developmental genes in Dictyostelium by restriction enzyme-mediated integration of plasmid DNA. Proc Natl Acad Sci U S A 89(18):8803–8807
Kuspa A, Loomis WF (1994) REMI-RFLP mapping in the Dictyostelium genome. Genetics 138(3):665–674
Larsen S, Weaver J, de Sa Campos K, Bulahan R, Nguyen J, Grove H, Huang A, Low L, Tran N, Gomez S (2013) Mutant strains of Pichia pastoris with enhanced secretion of recombinant proteins. Biotechnol Lett 35(11):1925–1935
Leem Y-e, Kim S-j, Ross IK, Choi HT (1999) Transformation and laccase mutant isolation in Coprinus congregatus by restriction enzyme-mediated integration. FEMS Microbiol Lett 172(1):35–40
Leem YE, Ross IK, Choi HT (2003) Tagging and localization of a phospholipase D gene in Coprinellus congregatus by restriction enzyme‐mediated integration and pulsed‐field gel electrophoresis. FEMS Microbiol Lett 225(2):285–289
Linnemannstons P, Voss T, Hedden P, Gaskin P, Tudzynski B (1999) Deletions in the gibberellin biosynthesis gene cluster of Gibberella fujikuroi by restriction enzyme-mediated integration and conventional transformation-mediated mutagenesis. Appl Environ Microbiol 65(6):2558–2564
Liu Y, Whittier RF (1995) Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics 25(3):674–681
Lopes FJF, Queiroz MV, Lima JO, Silva VAO, Araújo EF (2008) Restriction enzyme improves the efficiency of genetic transformations in Moniliophthora perniciosa, the causal agent of witches broom disease in Theobroma cacao. Braz Arch Biol Technol 51(1):27–34
Lu S, Lyngholm L, Yang G, Bronson C, Yoder OC, Turgeon BG (1994) Tagged mutations at the Tox1 locus of Cochliobolus heterostrophus by restriction enzyme-mediated integration. Proc Natl Acad Sci U S A 91(26):12649–12653
Maassen N, Freese S, Schruff B, Passoth V, Klinner U (2008) Nonhomologous end joining and homologous recombination DNA repair pathways in integration mutagenesis in the xylose‐fermenting yeast Pichia stipitis. FEMS Yeast Res 8(5):735–743
Maehara T, Yoshida M, Ito Y, Tomita S, Takabatake K, Ichinose H, Kaneko S (2010) Development of a gene transfer system for the mycelia of Flammulina velutipes Fv-1 strain. Biosci Biotechnol Biochem 74(5):1126–1128
Makino R, Kamada T (2004) Isolation and characterization of mutations that affect nuclear migration for dikaryosis in Coprinus cinereus. Curr Genet 45(3):149–156
Manivasakam P, Schiestl RH (1998) Nonhomologous end joining during restriction enzyme-mediated DNA integration in Saccharomyces cerevisiae. Mol Cell Biol 18(3):1736–1745
McVey M, Lee SE (2008) MMEJ repair of double-strand breaks (director’s cut): deleted sequences and alternative endings. Trends Genet 24(11):529–538
Michielse CB, Van Wijk R, Reijnen L, Cornelissen B, Rep M (2009) Insight into the molecular requirements for pathogenicity of Fusarium oxysporum f. sp. lycopersici through large-scale insertional mutagenesis. Genome Biol 10(1):R4
Morita K, Kimura S, Saito M, Shinoyama H, Usami T, Amemiya Y, Shishido M (2005) Generation and characterization of reduced virulence Fusarium oxysporum f. sp. lycopersici mutants through plasmid-vector insertion. Mycopathologia 160(1):67–73
Mukaiyama H, Oku M, Baba M, Samizo T, Hammond AT, Glick BS, Kato N, Sakai Y (2002) Paz2 and 13 other PAZ gene products regulate vacuolar engulfment of peroxisomes during micropexophagy. Genes Cells 7(1):75–90
Muraguchi H, Fujita T, Kishibe Y, Konno K, Ueda N, Nakahori K, Yanagi SO, Kamada T (2008) The exp1 gene essential for pileus expansion and autolysis of the inky cap mushroom Coprinopsis cinerea (Coprinus cinereus) encodes an HMG protein. Fungal Genet Biol 45(6):890–896
Nakazawa T, Tatsuta Y, Fujita T, Nakahori K, Kamada T (2010) Mutations in the Cc. rmt1 gene encoding a putative protein arginine methyltransferase alter developmental programs in the basidiomycete Coprinopsis cinerea. Curr Genet 56(4):361–367
Nakazawa T, Ando Y, Kitaaki K, Nakahori K, Kamada T (2011) Efficient gene targeting in ΔCc. ku70 or ΔCc. lig4 mutants of the agaricomycete Coprinopsis cinerea. Fungal Genet Biol 48(10):939–946
Namiki F, Matsunaga M, Okuda M, Inoue I, Nishi K, Fujita Y, Tsuge T (2001) Mutation of an arginine biosynthesis gene causes reduced pathogenicity in Fusarium oxysporum f. sp. melonis. Mol Plant Microbe Interact 14(4):580–584
Noh W, Kim SW, Bae D-W, Kim JY, Ro HS (2010) Genetic introduction of foreign genes to Pleurotus eryngii by restriction enzyme-mediated integration. J Microbiol 48(2):253–256
Ochman H, Gerber AS, Hartl DL (1988) Genetic applications of an inverse polymerase chain reaction. Genetics 120(3):621–623
Papp T, Csernetics Á, Nagy G, Bencsik O, Iturriaga EA, Eslava AP, Vágvölgyi C (2013) Canthaxanthin production with modified Mucor circinelloides strains. Appl Microbiol Biotechnol 97(11):4937–4950
Pears CJ, Couto CA, Wang HY, Borer C, Kiely R, Lakin ND (2012) The role of ADP-ribosylation in regulating DNA double-strand break repair. Cell Cycle 11(1):48–56
Ramamoorthy V, Zhao X, Snyder AK, Xu J, Shah DM (2007) Two mitogen‐activated protein kinase signalling cascades mediate basal resistance to antifungal plant defensins in Fusarium graminearum. Cell Microbiol 9(6):1491–1506
Redman RS, Rodriguez RJ (1994) Factors affecting the efficient transformation of Colletotrichum Species. Exp Mycol 18(3):230–246
Redman RS, Ranson JC, Rodriguez RJ (1999) Conversion of the pathogenic fungus Colletotrichum magna to a nonpathogenic, endophytic mutualist by gene disruption. Mol Plant Microbe Interact 12(11):969–975
Rho H, Kang S, Lee Y (2001) Agrobacterium tumefaciens-mediated transformation of the plant pathogenic fungus, Magnaporthe grisea. Mol Cells 12(3):407–411
Ridenour JB, Smith JE, Hirsch RL, Horevaj P, Kim H, Sharma S, Bluhm BH (2013) UBL1 of Fusarium verticillioides links the N‐end rule pathway to extracellular sensing and plant pathogenesis. Environ Microbiol 16(7):2004–2022. doi:10.1111/1462-2920.12333
Riggle PJ, Kumamoto CA (1998) Genetic analysis in fungi using restriction-enzyme-mediated integration. Curr Opin Microbiol 1(4):395–399
Rogers CW, Challen MP, Green JR, Whipps JM (2004) Use of REMI and Agrobacterium‐mediated transformation to identify pathogenicity mutants of the biocontrol fungus, Coniothyrium minitans. FEMS Microbiol Lett 241(2):207–214
Salame TM, Knop D, Tal D, Levinson D, Yarden O, Hadar Y (2012) Predominance of a versatile-peroxidase-encoding gene, mnp4, as demonstrated by gene replacement via a gene targeting system for Pleurotus ostreatus. Appl Environ Microbiol 78(15):5341–5352
Sanchez O, Navarro R, Aguirre J (1998) Increased transformation frequency and tagging of developmental genes in Aspergillus nidulans by restriction enzyme-mediated integration (REMI). Mol Gen Genet 258(1–2):89–94
Sato T, Yaegashi K, Ishii S, Hirano T, Kajiwara S, Shishido K, Enei H (1998) Transformation of the edible basidiomycete Lentinus edodes by restriction enzyme-mediated integration of plasmid DNA. Biosci Biotechnol Biochem 62(12):2346–2350
Sato T, Okawa K, Hirano T (2011) Construction of novel vectors for transformation of Lentinula edodes using a chitin synthase gene promoter. J Biosci Bioeng 111(2):117–120
Schiestl RH, Petes TD (1991) Integration of DNA fragments by illegitimate recombination in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 88(17):7585–7589
Schiestl RH, Zhu J, Petes TD (1994) Effect of mutations in genes affecting homologous recombination on restriction enzyme-mediated and illegitimate recombination in Saccharomyces cerevisiae. Mol Cell Biol 14(7):4493–4500
Seong K, Hou Z, Tracy M, Kistler HC, Xu J (2005) Random insertional mutagenesis identifies genes associated with virulence in the wheat scab fungus Fusarium graminearum. Phytopathology 95(7):744–750
Seong K, Li L, Hou Z, Tracy M, Kistler HC, Xu J (2006) Cryptic promoter activity in the coding region of the HMG-CoA reductase gene in Fusarium graminearum. Fungal Genet Biol 43(1):34–41
Sexton A, Howlett B (2001) Green fluorescent protein as a reporter in the Brassica–Leptosphaeria maculans interaction. Physiol Mol Plant Pathol 58(1):13–21
Shi Z, Christian D, Leung H (1995) Enhanced transformation in Magnaporthe grisea by restriction enzyme mediated integration of plasmid DNA. Phytopathology 85(3):329–333
Shim WB, Woloshuk CP (2001) Regulation of fumonisin B(1) biosynthesis and conidiation in Fusarium verticillioides by a cyclin-like (C-type) gene, FCC1. Appl Environ Microbiol 67(4):1607–1612
Shim W, Sagaram US, Choi Y, So J, Wilkinson HH, Lee Y (2006) FSR1 is essential for virulence and female fertility in Fusarium verticillioides and F. graminearum. Mol Plant Microbe Interact 19(7):725–733
Shuster J, Connelley MB (1999) Promoter-tagged restriction enzyme-mediated insertion (PT-REMI) mutagenesis in Aspergillus niger. Mol Gen Genet 262(1):27–34
Soid‐Raggi G, Sánchez O, Aguirre J (2006) TmpA, a member of a novel family of putative membrane flavoproteins, regulates asexual development in Aspergillus nidulans. Mol Microbiol 59(3):854–869
Stromhaug PE, Bevan A, Dunn WA Jr (2001) GSA11 encodes a unique 208-kDa protein required for pexophagy and autophagy in Pichia pastoris. J Biol Chem 276(45):42422–42435
Sweigard JA, Carroll AM, Farrall L, Chumley FG, Valent B (1998) Magnaporthe grisea pathogenicity genes obtained through insertional mutagenesis. Mol Plant Microbe Interact 11(5):404–412
Takano Y, Takayanagi N, Hori H, Ikeuchi Y, Suzuki T, Kimura A, Okuno T (2006) A gene involved in modifying transfer RNA is required for fungal pathogenicity and stress tolerance of Colletotrichum lagenarium. Mol Microbiol 60(1):81–92
Talhinhas P, Muthumeenakshi S, Neves-Martins J, Oliveira H, Sreenivasaprasad S (2008) Agrobacterium-mediated transformation and insertional mutagenesis in Colletotrichum acutatum for investigating varied pathogenicity lifestyles. Mol Biotechnol 39(1):57–67
Tanaka A, Shiotani H, Yamamoto M, Tsuge T (1999) Insertional mutagenesis and cloning of the genes required for biosynthesis of the host-specific AK-toxin in the Japanese pear pathotype of Alternaria alternata. Mol Plant Microbe Interact 12(8):691–702
Tang J, Liu L, Hu S, Chen Y, Chen J (2009) Improved degradation of organophosphate dichlorvos by Trichoderma atroviride transformants generated by restriction enzyme-mediated integration (REMI). Bioresour Technol 100(1):480–483
Thon M, Nuckles E, Vaillancourt L (2000) Restriction enzyme-mediated integration used to produce pathogenicity mutants of Colletotrichum graminicola. Mol Plant Microbe Interact 13(12):1356–1365
Tunlid A, Åhman J, Oliver R (1999) Transformation of the nematode‐trapping fungus Arthrobotrys oligospora. FEMS Microbiol Lett 173(1):111–116
Van Dijk R, Faber K, Hammond A, Glick B, Veenhuis M, Kiel J (2001) Tagging Hansenula polymorpha genes by random integration of linear DNA fragments (RALF). Mol Genet Genomics 266(4):646–656
Van Peer AF, De Bekker C, Vinck A, Wösten HAB, Lugones LG (2009) Phleomycin increases transformation efficiency and promotes single integrations in Schizophyllum commune. Appl Environ Microbiol 75(5):1243–1247
Wang Y, Guo B, Miao Z, Tang K (2007) Transformation of taxol‐producing endophytic fungi by restriction enzyme‐mediated integration (REMI). FEMS Microbiol Lett 273(2):253–259
Wang B, Liu L, Gao Y, Chen J (2009) Improved phytoremediation of oilseed rape (Brassica napus) by Trichoderma mutant constructed by restriction enzyme-mediated integration (REMI) in cadmium polluted soil. Chemosphere 74(10):1400–1403
Wang Y, Liu T, Hou J, Zuo Y (2013) Isolation and identification of pathogenicity mutant of Curvularia lunata via restriction enzyme-mediated integration. Indian J Microbiol 53(3):303–307
Weld RJ, Plummer KM, Carpenter MA, Ridgway HJ (2006) Approaches to functional genomics in filamentous fungi. Cell Res 16(1):31–44
Yakoby N, Zhou R, Kobiler I, Dinoor A, Prusky D (2001) Development of Colletotrichum gloeosporioides restriction enzyme-mediated integration mutants as biocontrol agents against anthracnose disease in avocado fruits. Phytopathology 91(2):143–148
Yang J, Zhao X, Liang L, Xia Z, Lei L, Niu X, Zou C, Zhang K (2011) Overexpression of a cuticle-degrading protease Ver112 increases the nematicidal activity of Paecilomyces lilacinus. Appl Microbiol Biotechnol 89(6):1895–1903
Yaver DS, Lamsa M, Munds R, Brown SH, Otani S, Franssen L, Johnstone JA, Brody H (2000) Using DNA-tagged mutagenesis to improve heterologous protein production in Aspergillus oryzae. Fungal Genet Biol 29(1):28–37
Yoshida T, Kawabe M, Miyata Y, Teraoka T, Arie T (2008) Biocontrol activity in a nonpathogenic REMI mutant of Fusarium oxysporum f. sp. conglutinans and characterization of its disrupted gene. J Pestic Sci 33(3):234–242
You B, Choquer M, Chung K (2007) The Colletotrichum acutatum gene encoding a putative pH-responsive transcription regulator is a key virulence determinant during fungal pathogenesis on citrus. Mol Plant Microbe Interact 20(9):1149–1160
Young C, McMillan L, Telfer E, Scott B (2001) Molecular cloning and genetic analysis of an indole‐diterpene gene cluster from Penicillium paxilli. Mol Microbiol 39(3):754–764
Yun S, Turgeon B, Yoder O (1998) REMI-induced mutants of Mycosphaerella zeae-maydis lacking the polyketide PM-toxin are deficient in pathogenesis to corn. Physiol Mol Plant Pathol 52(1):53–66
Zhou X, Xu S, Liu L, Chen J (2007) Degradation of cyanide by Trichoderma mutants constructed by restriction enzyme mediated integration (REMI). Bioresour Technol 98(15):2958–2962
Zhu H, Wang T, Sun S, Shen Y, Wei D (2006) Chromosomal integration of the Vitreoscilla hemoglobin gene and its physiological actions in Tremella fuciformis. Appl Microbiol Biotechnol 72(4):770–776
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Vos, A.M., Lugones, L.G., Wösten, H.A.B. (2015). REMI in Molecular Fungal Biology. In: van den Berg, M., Maruthachalam, K. (eds) Genetic Transformation Systems in Fungi, Volume 1. Fungal Biology. Springer, Cham. https://doi.org/10.1007/978-3-319-10142-2_26
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DOI: https://doi.org/10.1007/978-3-319-10142-2_26
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Publisher Name: Springer, Cham
Print ISBN: 978-3-319-10141-5
Online ISBN: 978-3-319-10142-2
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)