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Genetic Diversity Analysis of Mango

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The Mango Genome

Part of the book series: Compendium of Plant Genomes ((CPG))

Abstract

Genetic diversity is the foundation of plant breeding, and the importance of plant genetic diversity is increasingly being recognized as a specific field. The plant genetic diversity can be collected and preserved in the form of plant germplasm resources such as gene bank, DNA library, and so forth. Mango is one of the most excellent and popular tropical and subtropical fruit crops around the world. The study of mango genetic diversity using multiple molecular markers is an important strategy for mango germplasm collection, conservation, utilization, and new variety breeding. This chapter comprehensively reviews two important areas: (i) enumeration of existing plant genetic diversity by analytical methods; and (ii) modern tools available for plant genetic diversity analysis. The current review provides essential details about genetic diversity analysis of mango by morphological, biochemical, and molecular markers. The statistical tools used for assessing genetic diversity are briefly discussed, as it can promote the understanding of analysis tools and their practicality to the researchers. This review could benefit mango researchers and producers to employ the new methods and technologies for better and rapid evaluation, for efficient utilization of germplasm from genetic resources to their applied breeding programs.

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References

  • Ab Razak S, Azman NHEN, Ismail SN, Yusof MFM, Ariffin MAT, Sabdin ZHM, Abdullah N (2019) Assessment of diversity and population structure of mango (Mangifera indica L.) germplasm based on microsatellite (SSR) markers. Aust J Crop Sci 13(2):315–320

    Google Scholar 

  • Ahmed S (2004) Origin, history and distribution. In: Ahmed S (ed) Mangoes in Pakistan. The Horticultural Foundation of Pakistan, Islamabad, Pakistan, pp 1–26

    Google Scholar 

  • Akagi H, Yokozeki Y, Inagaki A, Nakamura A, Fujimura T (1996) A codominant DNA marker closely linked to the rice nuclear restorer gene, Rf-1, identified with inter-SSR fingerprinting. Genome 39(6):1205–1209

    Article  CAS  PubMed  Google Scholar 

  • Alghamdi S, Al-Faifi S, Migdadi H, Khan M, EL-Harty E, Ammar M, E (2012) Molecular diversity assessment using sequence related amplified polymorphism (SRAP) markers in Vicia faba L. Intl J Mol Sci 13(12):16457–16471

    Article  CAS  Google Scholar 

  • Ali S (2013) Morphological, physico-chemical characterization and evaluation of mango (Mangifera indica L.) germplasm in Multan (Pakistan). MSc Thesis, Institute of Horticultural Sciences, University of Agriculture, Faisalabad, Pakistan

    Google Scholar 

  • Alves E, Lima-Neto FP, Santos CAF, Ribeiro ICNS, Melo CAF, Holanda ISA, Souza AP, Corrêa RX (2016) Genetic diversity of mango accessions (Mangifera indica) using new microsatellite markers and morphological descriptors. Aust J Crop Sci 10(9):1281–1287

    Google Scholar 

  • Azmat MA, Khan AA, Khan IA, Rajwana IA, Cheema HMN, Khan AS (2016) Morphological characterization and SSR based DNA fingerprinting of elite commercial mango cultivars. Pak J Agri Sci 53(2):321–330

    Google Scholar 

  • Bajpai A, Srivastava N, Rajan S, Chandra R (2008) Genetic diversity and discrimination of mango accessions using RAPD and ISSR markers. Indian J Hort 65(4):377–382

    Google Scholar 

  • Bajpai A, Muthukumar M, Ahmad I, Ravishankar KV, Parthasarthy VA, Sthapit B, Rao R, Verma JP, Rajan S (2016) Molecular and morphological diversity in locally grown non-commercial (heirloom) mango varieties of North India. J Environ Biol 37(2):221–228

    CAS  PubMed  Google Scholar 

  • Bandopadhyay R, Sharma S, Rustgi S, Singh R, Kumar A, Balyan HS, Gupta PK (2004) DNA polymorphism among 18 species of Triticum-Aegilops complex using wheat EST-SSRs. Plant Sci 166:349–356

    Article  CAS  Google Scholar 

  • Barholia AK, Yadav S (2014) Divergence for fruit characters in mango (Mangifera indica L.). Afr J Agri Sci Technol 2:65–67

    Google Scholar 

  • Bhargava R, Khorwal R (2011) Molecular characterization of Mangifera indica by using RAPD marker. Indian J Fund Appl Life Sci 1:47–49

    Google Scholar 

  • Bhat ZA, Dhillon WS, Rashid R, Bhat JA, Dar WA, Ganaie MY (2010) Role of molecular markers in improvement of fruit crops. Not Sci Biol 2:22–30

    Article  CAS  Google Scholar 

  • Blears MJ, De Grandis SA, Lee H, Trevors JT (1998) Amplified fragment length polymorphism (AFLP): a review of the procedure and its applications. J Ind Microbiol Biotechnol 21(3):99–114

    Article  CAS  Google Scholar 

  • Buschiazzo E, Gemmell NJ (2006) The rise, fall and renaissance of microsatellites in eukaryotic genomes. BioEssays 28(10):1040–1050

    Article  CAS  PubMed  Google Scholar 

  • Cao D, Oard JH (1997) Pedigree and RAPD-based DNA analysis of commercial US rice cultivars. Crop Sci 37(5):1630–1635

    Article  CAS  Google Scholar 

  • Chapman MA, Hvala J, Strever J, Matvienko M, Kozik A, Michelmore RW, Tang S, Knapp SJ, Burke JM (2009) Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.). Theor Appl Genet 120:85–91

    Article  CAS  PubMed  Google Scholar 

  • Chen WY, He HM (2000) Study on peroxidase isoenzyme of mango. Chin Wild Plant Resour 19(5):52–55

    CAS  Google Scholar 

  • Chunwongse J, Phumichai C, Chungwongse C, Sukansawan S, Bonreungrawd R, Babprasert C (2000) Molecular mapping of mango cultivars ‘Alphonso’ and ‘Palmer’. Acta Hort 509:193–206

    Article  CAS  Google Scholar 

  • Coates BS, Sumerford DV, Miller NJ, Kim KS, Sappington TW, Siegfried BD, Lewis LC (2009) Comparative performance of single nucleotide polymorphism and microsatellite markers for population genetic analysis. J Hered 100(5):556–564

    Article  CAS  PubMed  Google Scholar 

  • Collard BC, Mackill DJ (2009) Start codon targeted (SCoT) polymorphism: a simple, novel DNA marker technique for generating gene-targeted markers in plants. Plant Mol Biol Rep 27(1):86

    Article  CAS  Google Scholar 

  • Daga A, Gazit S, Eisenstein D, El-Batsri R, Degani C (1999) Effect of the male parent on pericarp and seed weights in several Floridian mango cultivars. Sci Hort 82:325–329

    Article  Google Scholar 

  • Dang ZG, Chen YY (2017) Construction of a genetic linkage map of mango based on SRAP, AFLP and ISSR Markers. Agri Biotechnol 6(6):9–12, 16

    Google Scholar 

  • Dao Y (2019) RAPD analysis of genetic diversity of mango at Panzhihua region in Sichuan. Jian Agri Sci 47(13):35–38

    Google Scholar 

  • Degani M, Cohen O, Reuveni RF, Basstri, x (1993) Frequency and characteristics of zygotic seedling from polyembryonic mango cultivars determined using isozyme as genetic markers. Acta Hort 341:256–259

    Google Scholar 

  • De Keyser E, de Rick J, van Bockstaele E (2009) Discovery of species-wide EST-derived markers in Rhododendron by intron-flanking primer design. Mol Breed 23:171–178

    Article  CAS  Google Scholar 

  • Desai AR, Dhandar DG (2000) Variation in physico-chemical and morphogenetic characters of some mango varieties of Goa. Acta Hort 509:243–252

    Article  Google Scholar 

  • Dillon NL, Innes DJ, Bally ISE, Wright CL, Devitt LC, Dietzgen RG (2014) Expressed sequence tag-simple sequence repeat (EST-SSR) marker resources for diversity analysis of mango (Mangifera indica L.). Diversity 6:72–87

    Article  CAS  Google Scholar 

  • Diaz-Matallana M, Schuler-Garcia I, Ruiz-Garcia M, Jaramillo EHD (2009) Analysis of diversity among six populations of Colombian mango (Mangifera indica L. cvar. Hilacha) using RAPDs markers. Elec J Biotechnol 12(3):1–8

    Google Scholar 

  • Dinesh MR, Ravishankar KV, Sthapit B, Parthasarathy VA, Sandya BS, Nischita P, Lavanya B (2015) Genetic diversity studies in certain Indigenous mango (Mangifera indica L) varieties. Indian J Plant Genet Resour 28(1):153–160

    Article  Google Scholar 

  • Duval MF, Bunel J, Sitbon C, Risterucci AM (2005) Development of microsatellite markers for mango (Mangifera indica L.). Mol Ecol Notes 4:824–826

    Article  CAS  Google Scholar 

  • Damodaran T, Kannan R, Ahmed I, Srivastava RC, Rai RB, Umamaheshwari S (2012) Assessing genetic relationships among mango (Mangifera indica L.) accessions of Andaman Islands using inter simple sequence repeat markers. NZ J Exp Agri 40(4):229–240

    Google Scholar 

  • Eiadthong W, Yonemori K, Kanzaki S, Sugiura A, Utsunomiya N, Subhadrabandhu S (1999a) Amplified fragment length polymorphism (AFLP) analysis for studying the genetic relationships among Mangifera species in Thailand. J Am Soc Hort Sci 125:160–164

    Article  Google Scholar 

  • Eiadthong W, Yonemoni K, Kanzaki S, Sugiura A, Utsunomiya N, Subhadrabandhu S (1999b) Identification of mango cultivars of Thailand and evaluation of their genetic variation using the amplified fragments by simple sequence respect (SSR) anchored primers. Sci Hort 82:57–66

    Article  CAS  Google Scholar 

  • Ekblom R, Galindo J (2011) Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity 107(1):1–15

    Article  CAS  PubMed  Google Scholar 

  • Ellis JR, Burke JM (2007) EST-SSRs as a resource for population genetic analyses. Heredity 99:125–132

    Article  CAS  PubMed  Google Scholar 

  • Fan WG, Luo Y, Wu SF, Ge HM (2012) Morphological Characteristics and distribution of wild germplasm resources of Mangifera indica in South and North Pan River Valley. SW Chin J Agri Sci 25(6):2244–2247

    Google Scholar 

  • Fang JG, Liu DJ, Zhang Z, Hillel J, Lavi U (1999) The construction of the fingerprinting of two mango cultivars using AFLP. J Nanjing Agri Univ 22:25–27

    CAS  Google Scholar 

  • Fang DQ, Roose ML (1997) Identification of closely related citrus cultivars with inter-simple sequence repeat markers. Theor Appl Genet 95(3):408–417

    Article  CAS  Google Scholar 

  • Fukuoka S, Hosaka K, Kamijima O (1992) Use of random amplified polymorphic DNAs (RAPDs) for identification of rice accessions. Jpn J Genet 67(3):243–252

    Article  CAS  Google Scholar 

  • Gajera HP, Tomar RS, Patel SV, Viradia RR (2011) Golakiya BA (2011) Comparison of RAPD and ISSR markers for genetic diversity analysis among different endangered Mangifera indica genotypes of Indian Gir forest region. J Plant Biochem Biotechnol 20(2):217–223

    Article  Google Scholar 

  • Gajera HP, Bambharolia RP, Domadiya RK, Patel SV, Golakiya BA (2013) Molecular characterization and genetic variability studies associated with fruit quality of indigenous mango (Mangifera indica L.) cultivars. Plant Syst Evol 300(5):1011–1020

    Google Scholar 

  • Galal OA, Galal HA, Aboulila AA (2017) Genetic variability and molecular characterization of some local and imported mango cultivars in Egypt. Egyp J Genet Cytol 46(1):121–138

    Article  Google Scholar 

  • Gálvez-López D, Hernández-Delgado S, González-Paz M, Becerra-Leor EM, Salvador-Figueroa M, Mayek-Pérez N (2009) Genetic analysis of mango landraces from Mexico based on molecular markers. Plant Genet Resour 7(3):244–251

    Article  Google Scholar 

  • Gálvez-López D, Salvador-Figueroa M, Becerra-Leor EN, González-Paz M, Hernández-Delgado S, Mayek-Pérez N (2010) Molecular diversity and genetic relationships of mango germplasm from Chiapas. Mexico. Agrociencia 44(8):907–915

    Google Scholar 

  • Ganogpichayagrai A, Rungsihirunrat K, Palanuvej C, Ruangrungsi N (2016) Characterization of Mangifera indica cultivars in Thailand based on macroscopic, microscopic, and genetic characters. J Adv Pharmaceut Technol Res 7(4):127–133

    Article  CAS  Google Scholar 

  • Gao AP, Chen YY, Jonathan HC, Zhu M, Huang JF, Luo HY, He YH (2010) AFLP analysis on the genetic diversity of two hundred accessions of mango in China. IX International Mango Symposium 992:295–307

    Google Scholar 

  • Godwin ID, Aitken EA, Smith LW (1997) Application of inter simple sequence repeat (ISSR) markers to plant genetics. Electrophoresis 18(9):1524–1528

    Article  CAS  PubMed  Google Scholar 

  • Gonzalez A, Coulson M, Brettell R (2002) Development of DNA markers (ISSRs) in mango. Acta Hort 575:139–143

    Article  CAS  Google Scholar 

  • Govindaraj M, Vetriventhan M, Srinivasan M (2015) Importance of genetic diversity assessment in crop plants and its recent advances: an overview of its analytical perspectives. Genet Res Intl. https://doi.org/10.1155/2015/431487

    Article  Google Scholar 

  • Gupta M, Chyi YS, Romero-Severson J, Owen JL (1994) Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple-sequence repeats. Theor Appl Genet 89(7–8):998–1006

    Article  CAS  PubMed  Google Scholar 

  • Gitahi R, Kasili R, Kyallo M, Kehlenbeck K (2016) Diversity of threatened local mango landraces on smallholder farms in Eastern Kenya. Forests Trees Livelihoods 25(4):239–254

    Article  Google Scholar 

  • Hartless AC (1913) The flowering of mango. Agri J India 8:9–12

    Google Scholar 

  • He XH, Li YR, Guo YZ, Tang ZP, Li RB (2005) Genetic analysis of 23 mango cultivar collection in Guangxi Province revealed by ISSR. Mol Plant Breed 3(6):829–834

    CAS  Google Scholar 

  • He XH, Guo YZ, Li YR, Ou SJ (2007) Assessment of the genetic relationship and diversity of mango and its relatives by cpISSR marker. Agri Sci China 6:137–142

    Article  CAS  Google Scholar 

  • Hirano R, Oo TH, Watanabe KN (2010) Myanmar mango landraces reveal genetic uniqueness over common cultivars from Florida, India, and Southeast Asia. Genome 53(4):321–330

    Article  CAS  PubMed  Google Scholar 

  • Huang LF (2010) Study on genetic diversity of rootstock germplasm resources from main mango producing areas by SSR marker. MSc Thesis, Hainan University, Haikou, China

    Google Scholar 

  • Huang LF, Yan L, Fan R, Yao QS, Liu Y (2011) Genetic Diversity Analysis of Seedling Resources of Mango (Mangifera indica L.) by SSR Markers. Chin J Trop Crops 32(10):1828–1832

    Google Scholar 

  • Human CF (2008) Production areas. In: deVilliers EA, Joubert PH (eds) The Cultivation of Mango. ARC Institute for Tropical and Subtropical Crops, Florida, USA, pp 5–64

    Google Scholar 

  • Ibrahim M (1952) A study of the distinguishing vegetative, floral and fruit characteristics of Punjab Mangoes. MSc Thesis, University of Punjab, Lahore, Pakistan

    Google Scholar 

  • IPGRI (2006) Descriptors for Mango (Mangifera indica L.). International Plant Genetic Resources Institute, Rome, Italy

    Google Scholar 

  • Iyer CPA, Degani C (1997) Classical breeding and genetics. In: Litz RE (ed) The mango, botany, production, and uses. CAB International, Wallingford, Oxon, UK, pp 49–68

    Google Scholar 

  • Jaccard P (1908) Nouvelles researches sur la distribution florale. Bulletin de la Société Vaudoise des Sciences Naturelles 44:233–270

    Google Scholar 

  • Jayasankar S, Litz RE, Schnell RJ, Hernandez A (1998) Embryogenic mango cultures selected for resistance to colletotrichum gloeosporioides culture filtrate show variation in random amplified polymorphic DNA (RAPD) markers. Vitro Cell Dev Biol-Plant 34(2):112–116

    Article  CAS  Google Scholar 

  • Jena RC, Samal KC, Chand PK, Das BK (2010) Molecular characterization of 12 mango germplasm using RAPD markers. Plant Tiss Cult Biotechnol 20(1):91–99

    Article  Google Scholar 

  • Jintanawongse S, Changtragoon S (2000) Identification of cultivars and certification of hybrids in mango (Mangifera indica L.) by isozymes gene markers. Acta Hort 509:177–184

    Article  CAS  Google Scholar 

  • Kanazin V, Talbert H, See D, DeCamp P, Nevo E, Blake T (2002) Discovery and assay of single-nucleotide polymorphisms in barley (Hordeum vulgare). Plant Mol Biol 48(5–6):529–537

    Article  CAS  PubMed  Google Scholar 

  • Karibasappa GS (1995) Morpho-phenological, fruit physico-chemical and isozymes characterization of (Mangifera indica L) germplasm, using principal component analysis. MSc Thesis, Dharwad University of Agricultural Sciences, Dharwad, Karnataka, India

    Google Scholar 

  • Karihaloo JL, Dwivedi YK, Archak S, Gaikwad AB (2003) Analysis of genetic diversity of Indian mango cultivars using RAPD markers. J Hort Sci Biotechnol 78(3):285–289

    Article  CAS  Google Scholar 

  • Karp A, Kresovich S, Bhat KV, Ayad WG, Hodgkin T (1997) Molecular tools in plant genetic resources conservation: a guide to the technologies. IPGRI Technical Bulletin 2, International Plant Genetic Resources Institute, Rome, Italy

    Google Scholar 

  • Kashkush K, Jinggui F, Tomer E, Hillel J, Lavi U (2001) Cultivar identification and genetic map of mango. Euphytica 122:129–136

    Article  CAS  Google Scholar 

  • Kaur A, Ha CO, Jong K, Sands VE, Chan HT, Soepadmo E, Ashton PS (1980) Apomixis may be widespread among trees of the climax rain forest. Nature 271:440–442

    Article  Google Scholar 

  • Khan AA (1960) Relation of growth to fruit bearing in mangoes. Punjab Fruit J. 23:117–140

    Google Scholar 

  • Khan SK, Ali S, Khan IA (2015) Morphological and molecular characterization and evaluation of mango germplasm: An overview. Sci Hort 194:353–366

    Article  Google Scholar 

  • Knight RJ Jr, Campbell RJ, Maguire I (2009) Important mango cultivars and their descriptors. In: Litz RE (ed) The Mango, Botany, Production and Uses. CAB International, Boca Raton, Florida, USA, pp 43–52

    Google Scholar 

  • Krishna H, Singh SK (2007) Biotechnological advances in mango (Mangifera indica L.) and their future implication in crop improvement. Biotechnol Adv 25:223–243

    Article  CAS  PubMed  Google Scholar 

  • Krishnapillai N, Wijeratna RSW (2016) Morphometric analysis of mango varieties in Sri Lanka. Aust J Crop Sci 10(6):784–792

    Article  Google Scholar 

  • Kuhn D, Dillon N, Innes D, Wu LS, Mockaitis K (2014) Development of single nucleotide polymorphism (SNP) markers from the mango (Mangifera indica) transcriptome for mapping and estimation of genetic diversity. XXIX International Horticultural Congress on Horticulture: Sustaining Lives, Livelihoods and Landscapes (IHC2014): IV 1111. 315–322

    Google Scholar 

  • Kuhn DN, Bally ISE, Dillon NL, Innes D, Groh AM, Rahaman J, Ophir R, Cohen Y, Sherman A (2017) Genetic Map of mango: a tool for mango breeding. Front Plant Sci 8:577

    Article  PubMed  PubMed Central  Google Scholar 

  • Kuhn DN, Dillon N, Bally I, Groh A, Rahaman J, Warschefsky E, Freeman B, Innes D, Chambers AH (2019) Estimation of genetic diversity and relatedness in a mango germplasm collection using SNP markers and a simplified visual analysis method. Sci Hort 252:156–168

    Article  Google Scholar 

  • Kumar H, Narayanaswamy P, Prasad T, Mukunda GK, Sondur S (2001) Estimation of genetic diversity of commercial mango (Mangifera indica L.) cultivars using RAPD markers. J Hort Sci Biotechnol 76(5): 529–533

    Google Scholar 

  • Kumari N, Thakur SK (2014) Randomly amplified polymorphic DNA-A brief review. Amer J Anim Vet Sci 9(1):6–13

    Article  Google Scholar 

  • Kumar KL, Sreekala AK (2016) Genetic diversity study, by using RAPD techniques among the selected natural varieties of Mangifera Indica L. occurring at Nedumangadu Taluk of the Thiruvananthapuram District in Kerala State of India. Imper J Interdiscipl Res 2(5): 1123–1126

    Google Scholar 

  • Lakshminarayana S (1980) The mango. In: Nagy S, Shaw PE (eds) Tropical and subtropical fruits: composition, properties and uses. AVI Publishers, West port, Connecticut, USA, pp 184–257

    Google Scholar 

  • Lal S, Singh AK, Singh SK, Srivastav M, Singh BP, Sharma N, Sing NM (2017) Association analysis for pomological traits in mango (Mangifera indica L.) by genic-SSR markers. Trees 31(5):1391–1409

    Google Scholar 

  • Levi A, Thomas CE (2007) DNA markers from different linkage regions of watermelon genome useful in differentiating among closely related watermelon genotypes. HortScience 42(2):210–214

    Article  CAS  Google Scholar 

  • Levi A, Wechter P, Massey L, Carter L, Hopkins D (2011) An extended genetic linkage map for watermelon based on a testcross and a BC2F2 population. Amer J Plant Sci 2(2):93–110

    Article  CAS  Google Scholar 

  • Li G, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103:455–461

    Article  CAS  Google Scholar 

  • Li GP, Zhang LH, Xie DH, Yu YC, Chen YF, Chen HR, Wamg MC, Ni ZG (2010) Analysis of the correlations between fruit traits and diversity of quality traits within mango (Mangifera indica L.) germplasm resource in Nujiang hot-dry valley. SW China J Agri Sci 23(4):1225–1229

    Google Scholar 

  • Li ZQ (2016) Construction of molecular genetic map and genetic diversity analysis in mango hybrid F1. MSc Thesis, Hainan University, Haikou, China

    Google Scholar 

  • Li ZQ, Dang ZG, Zhao ZC, Huang JF, Gao AP, Chen YY (2016) Genetic diversity analyze of mango’s F1 hybrids and construction of genetic map. Mol Plant Breed 14(4):953–958

    CAS  Google Scholar 

  • Liu L, Liu G, Gong Y, Dai W, Wang Y, Yu F, Ren Y (2007) Evaluation of genetic purity of F1 hybrid seeds in cabbage with RAPD, ISSR, SRAP, and SSR markers. HortScience 42(3):724–727

    Article  CAS  Google Scholar 

  • Liu R, Gong DY, Liu QG, Huang H, Fan JX (2019) Genetic diversity analysis of thirteen mango germplasm resources based on SRAP molecular markers. Chin J Trop Crops 40(1):87–91

    Google Scholar 

  • Litz RE (ed) (2003) The mango: botany, production and uses. Tropical Research and Education Centre, University of Florida, USA

    Google Scholar 

  • Litz RE (2004) Biotechnology and mango improvement. Acta Hort 645:85–92

    Article  Google Scholar 

  • Luo C, He XH, Chen H, Ou SJ, Gao MP (2010) Analysis of diversity and relationships among mango cultivars using Start Codon Targeted (SCoT) markers. Biochem Syst Ecol 38(6):1176–1184

    Article  CAS  Google Scholar 

  • Luo C, He XH, Chen H, Ou SJ, Gao MP, Brown JS, Tondo CT, Schnell RJ (2011) Genetic diversity of mango cultivars estimated using SCoT and ISSR markers. Biochem Syst Ecol 39:676–684

    Article  CAS  Google Scholar 

  • Luo C, He XH, Chen H, Hu Y, Ou SJ (2012) Genetic relationship and diversity of Mangifera indica L.: Revealed through SCoT analysis. Genet Resour Crop Evol 59(7):1505–1515

    Google Scholar 

  • Luo C, Wu HX, Yao QS, Wang SB, Xu WT (2015a) Development of EST-SSR and TRAP markers from transcriptome sequencing data of the mango. Genet Mol Res 14(3):7914–7919

    Article  CAS  PubMed  Google Scholar 

  • Luo HY, Ying DS, Huang JF, Peng SN, Hong JW, Wang M, Chen YY (2015b) AFLP analysis of the genetic diversity of 78 mango germplasms resources. Chin J Trop Crops 36(12):2130–2137

    Google Scholar 

  • Mammadov J, Aggarwal R, Buyyarapu R, Kumpatla S (2012) SNP markers and their impact on plant breeding. Intl J Plant Genom 2012, doi:10.1155/2012/728398

    Google Scholar 

  • Mansour H, Mekki LE Hussein MA (2014) Assessment of genetic diversity and relationships among Egyptian mango (Mangifera indica L.) cultivers grown in Suez Canal and Sinai region using RAPD markers. Pak J Biol Sci 17(1):56–61

    Google Scholar 

  • Mason AS (2015) SSR genotyping. In: Batley J (eds) Plant genotyping. Methods in molecular biology (Methods and Protocols), vol 1245. Humana Press, New York, pp 77–89

    Google Scholar 

  • Matallana DM, Garcia SI, Garcia RM, Jaramillo DEH (2009) Analysis of diversity among six populations of Colombian mango (Mangifera indica L. cv. Hilacha) using RAPDs markers. Elec J Biotechnol 12:1–8

    Google Scholar 

  • Majumder DAN, Hassan L, Kabir MA (2011) Genetic diversity of mango (Mangifera indica L. Anacardiaceae) detected by RAPD markers. Intl J Agri Environ Biotechnol 4(1):45–51

    Google Scholar 

  • Meyer W, Mitchell TG, Freedman EZ, Vilgalys R (1993) Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans. J Clin Microbiol 31(9):2274–2280

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mo R, Luo YH, Zhou SM, Liu JP (2005) Polyembryony in mango (Mangifera indica L.) and genetic analysis. J Trop Subtrop Bot 13(6): 475– 479

    Google Scholar 

  • Mohammadi SA, Prasanna BM (2003) Analysis of genetic diversity in crop plants–salient statistical tools and considerations. Crop Sci 43(4):1235–1248

    Article  Google Scholar 

  • Mohan M, Nair S, Bhagwat A, Krishna TG, Yano M, Bhatia CR, Sasaki T (1997) Genome mapping, molecular markers and marker-assisted selection in crop plants. Mol Breed 3(2):87–103

    Article  CAS  Google Scholar 

  • Mukherjee SK, Rao MM (1943) Studies on blossom biology and pollination in mangoes (Mangifera indica L.). Indian J Hort 1:107–119

    Google Scholar 

  • Mukherjee SK (1997) Introduction: botany and importance. In: Litz RE (ed) The mango: botany, production and uses. CAB International, Boca Raton, Florida, USA, pp 1–19

    Google Scholar 

  • Mukherjee SK, Litz RE (2009) Introduction: Botany and Importance. In: Litz RE (ed) The mango, 2nd edn: botany, production and uses. CAB International, New York, USA, pp 1–18

    Google Scholar 

  • Mussane CRB (2010) Morphological and genetic characterization of mango (Mangifera indica L.) varieties in Mozambique. MSc Thesis, University of the Free State, Bloemfontein, South Africa

    Google Scholar 

  • Nazish T, Shabbir G, Ali A, Sami-ul-Allah S, Naeem M, Javed M, Seher R (2017) Molecular diversity of Pakistani mango (Mangifera indica L.) varieties based on microsatellite markers. Genet Mol Res 16(2): 2–8

    Google Scholar 

  • Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76(10):5269–5273

    Article  CAS  PubMed  Google Scholar 

  • Pandit SS, Mitra SM, Giri AP, Pujari KH, Patil BP, Jambhale ND, Gupta VS (2007) Genetic diversity analysis of mango cultivars using inter simple sequence repeat markers. Curr Sci 93(8):1135–1141

    Google Scholar 

  • Phumichai C, Phumichai T, Wongkaew A (2015) Novel chloroplast microsatellite (cpSSR) markers for genetic diversity assessment of cultivated and wild Hevea rubber. Plant Mol Biol Rep 33(5):1486–1498

    Article  CAS  Google Scholar 

  • Prasad A, Prasad A (1972) Performance studies on polyembryonic varieties of mango (Mangifera indica L.). Acta Hort 24:31–35

    Article  Google Scholar 

  • Pruthvish R, Chikkaswamy BK (2016) Genetic diversity and relationships among mango varieties using RAPD molecular markers. Intl J Curr Microbiol Appl Sci 5(1):778–787

    Article  CAS  Google Scholar 

  • Rahman ML, Rabbani MG, Siddique MNA, Rahman MA, Garvey EJ, Rahaman EHMS (2007) Molecular characterization of 28 mango germplasm using RAPD. Plant Tiss Cult Biotechnol 17(1):71–77

    Article  Google Scholar 

  • Rajwana IA, Tabbasam N, Malik AU, Malik SA, Rahman M, Zafar Y (2008) Assessment of genetic diversity among mango (Mangifera indica L.) genotypes using RAPD markers. Sci Hort 117:297–301

    Article  CAS  Google Scholar 

  • Rajwana IA, Khan IA, Malik AU, Saleem BA, Khan AS, Ziaf K, Anwar R, Amin M (2011) Morphological and bio-chemical markers for varietal characterization and quality assessment of potential indigenous mango (Mangifera indica L.) germplasm. Intl J Agri Biol 13:151–158

    Google Scholar 

  • Ramessur AD, Ranghoo-Sanmukhiya VMS (2011) RAPD Marker-assisted identification of genetic diversity among mango (Mangifera indica) varieties in Mauritius. Intl J Agri Biol 13:167–173

    CAS  Google Scholar 

  • Ramı́rez F and Davenport TL (2010) Mango (Mangifera indica L.) flowering physiology. Sci Hort 126 (2):65–72

    Google Scholar 

  • Ramı́rez F and Davenport TL, F (2016) Mango (Mangifera indica L.) pollination. A review. Sci Hort 203:158–168

    Article  Google Scholar 

  • Ratnaparkhe MB, Tekeoglu M, Muehlbauer FJ (1998) Inter-simple-sequence-repeat (ISSR) polymorphisms are useful for finding markers associated with disease resistance gene clusters. Theor Appl Genet 97(4):515–519

    Article  CAS  Google Scholar 

  • Ravishankar KV, Bommisetty P, Bajpai A, Srivastava N, Mani BH, Vasugi C, Rajan S, Dinesh MR (2015a) Genetic diversity and population structure analysis of mango (Mangifera indica) cultivars assessed by microsatellite markers. Trees 29(3):775–783

    Article  Google Scholar 

  • Ravishankar KV, Dinesh MR, Nischita P, Sandya BS (2015b) Development and characterization of microsatellite markers in mango (Mangifera indica) using next-generation sequencing technology and their transferability across species. Mol Breed 35(93):1–13

    CAS  Google Scholar 

  • Raza SA, Khan AS, Khan IA, Rajwana IA, Ali S, Khan AA, Rehman A (2017) Morphological and physico-chemical diversity in some indigenous mango (Mangifera indica L.) germplasm of Pak J Agric Sci 54(2):287–297; 2017

    Google Scholar 

  • Reddy MP, Sarla N, Siddiq EA (2002) Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica 128(1):9–17

    Article  Google Scholar 

  • Rhodes MA, Campbell G, Malo SE, Camer SG (1970) A numerical taxonomic studies of the mango (Mangifera indica L.). J Am Soc Hort Sci 95:252–256

    Article  Google Scholar 

  • Rocha A, Salomão LCC, Salomao TMF, Cruz CD, Siqueira DL (2012) Genetic diversity of ‘Uba’mango tree using ISSR markers. Mol Biotechnol 50(2):108–113

    Article  CAS  PubMed  Google Scholar 

  • Rymbai H, Laxman RH, Dinesh MR, John Sunoj VS, Ravishankar KV, Jha AK (2014) Diversity in leaf morphology and physiological characteristics among mango (Mangifera indica) cultivars popular in different agro-climatic regions of India. Sci Hort 176:189–193

    Article  Google Scholar 

  • Sachar RC, Chopra RN (1957) A study of the endosperm and embryo in Mangifera indica L. Indian J Agric Sci 27:219–228

    Google Scholar 

  • Samal KC, Jena RC, Swain SS, Das BK, Chand PK (2012) Evaluation of genetic diversity among commercial cultivars, hybrids and local mango (Mangifera indica L.) genotypes of India using cumulative RAPD and ISSR markers. Euphytica 185(2):195–213

    Google Scholar 

  • Samant D, Singh AK, Srivastav M, Singh NK (2010) Assessment of genetic diversity in mango using inter simple sequence repeat markers. Indian J Hort 67:1–8

    Google Scholar 

  • Sandip M, Sandip AN, Barad AV, Nawade BD (2015) Physiology of flowering - the case of mango. Intl J Appl Res 1(11):1008–1012

    Google Scholar 

  • Sankar AA, Moore GA (2001) Evaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of the genetic linkage map. Theor Appl Genet 102(2–3:206–214

    Google Scholar 

  • Schnell RJ, Brown JS, Olano CT, Meerow AW (2006) Mango genetic diversity analysis and pedigree inferences for Florida cultivars using microsatellite markers. J Am Soc Hort Sci 131:214–224

    Article  CAS  Google Scholar 

  • Schnell RJ, Ronning CM, Knight RJ (1995) Identification of cultivars and validation of genetic relationships in Mangifera indica L. using RAPD markers. Theor Appl Genet 90(2):269–274

    Google Scholar 

  • Schnell RJ, Olano CT, Quintanilla WE, Meerow AW (2005) Isolation and characterization of 15 microsatellite loci from mango (Mangifera indica L.) and cross-species amplification in closely related taxa. Mol Ecol Resour 5(3):625–627

    Google Scholar 

  • Selkoe KA, Toonen RJ (2006) Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecol Lett 9(5):615–629

    Article  PubMed  Google Scholar 

  • Semagn K, Bjørnstad Å, Ndjiondjop MN. An overview of molecular marker methods for plants. Afr J Biotechnol 5(25):2540–2568

    Google Scholar 

  • Sennhenn A, Prinz K, Gebauer J, Whitbread A, Jamnadass R, Kehlenbeck K (2014) Identification of mango (Mangifera indica L.) landraces from Eastern and Central Kenya using a morphological and molecular approach. Genet Res Crop Evol 61:7–22

    Article  Google Scholar 

  • Shamili M, Fatahi R, Hormaza JI (2012) Characterization and evaluation of genetic diversity of Iranian mango (Mangifera indica L. Anacardiaceae) genotypes using microsatellites. Sci Hort 148:230–234

    Article  CAS  Google Scholar 

  • Shenoy SB, Rajagopala A (2016) Morphological and anatomical characters related to dwarfness in mango (Mangifera indica L.). J Trop Agric 54 (1):84–86

    Google Scholar 

  • Sherman A, Rubinstein M, Eshed R, Benita M, Ish-Shalom M, Sharabi-Schwager M, Ophir R (2015) Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome. BMC Plant Biol 15(1):277

    Google Scholar 

  • Shi SY, Wu HX, Wang SB, Liu LQ, Wang YC, Ma WH (2011) Genetic diversity of mango germplasm based on morphological characters and AFLP markers. Acta Hort Sin 38(3):449–456

    CAS  Google Scholar 

  • Singh LB (1968) The mango botany, cultivation and uses. Leonard Hill Books, London, UK

    Google Scholar 

  • Singh A, Singh AK, Singh SK (2012) SSR markers reveal genetic diversity in closely related mango hybrids. Indian J Hort 69(3):299–305

    Google Scholar 

  • Sokal RR, Michener CD (1958) A statistical method for evaluating systematic relationships. Univ Kansas Sci Bull 38:1409–1438

    Google Scholar 

  • Souza IGB, Valente SES, Britto FB, de Souza VAB, Lima PDC (2011) RAPD analysis of the genetic diversity of mango (Mangifera indica) germplasm in Brazil. Genet Mol Res 10(4):3080–3089

    Article  CAS  PubMed  Google Scholar 

  • Squirrell J, Hollingsworth PM, Woodhead M, Russell J, Lowe AJ, Gibby M, Powell W (2003) How much effort is required to isolate nuclear microsatellites from plants? Mol Ecol 12(6):1339–1348

    Article  CAS  PubMed  Google Scholar 

  • Sturrock TT (1968) Genetics of mango polyembryony. Proc Fla State Hort Soc 82:318–321

    Google Scholar 

  • Surapaneni M, Vemireddy LR, Begum H, Reddy BP, Neetasri C, Nagaraju J, Anwar SY, Siddiq EA (2013) Population structure and genetic analysis of different utility types of mango (Mangifera indica L.) germplasm of Andhra Pradesh state of India using microsatellite markers. Plant Syst Evol 299:1215–1229

    Article  CAS  Google Scholar 

  • Tenaillon MI, Sawkins MC, Long AD, Gaut R L, Doebley J F, Gaut BS (2001) Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc Natl Acad Sci USA 98(16):9161–9166

    Google Scholar 

  • Tisserat B, Esen EB, Murashige T (1979) Somatic embryogenesis in angiosperms. Hort Rev 1:1–72

    Google Scholar 

  • Tomar RS, Gajera HP, Viradiya RR, Patel SV, and Golakiya, BA (2011) Phylogenetic relationship among Mango (Mangifera indica L.) landraces of Saurashtra based on DNA fingerprinting. J Hort For 3(13):379–385

    Google Scholar 

  • Tsai CC, Chen YKH, Chen CH, Weng IS, Tsai CM, Lee SR, Lin YS, Chiang YC (2013) Cultivar identification and genetic relationship of mango (Mangifera indica) in Taiwan using 37 SSR markers. Sci Hort 164:196–201

    Article  CAS  Google Scholar 

  • Uzun AYDIN, Yesiloglu T, Aka-Kacar Y, Tuzcu O, Gulsen O (2009) Genetic diversity and relationships within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs). Sci Hort 121(3):306–312

    Article  CAS  Google Scholar 

  • Warschefsky EJ, von Wettberg EJ (2019) Population genomic analysis of mango (Mangifera indica) suggests a complex history of domestication. New Phytol 222(4):2023–2037

    Article  CAS  PubMed  Google Scholar 

  • Wang M, Ying DS, Wang QF, Li LP, Zhang RL (2015) Genetic diversity analysis and fingerprint construction for mango cultivars in China. J Southern Agric 46(7):1154–1159

    Google Scholar 

  • Whitton J, Rieseberg LH, Ungerer MC (1997) Microsatellite loci are not conserved across the Asteraceae. Mol Biol Evol 14(2):204–209

    Article  CAS  PubMed  Google Scholar 

  • Xie DH, Zhang GX, Zhang YC, Ni ZG,Chen YF, Zhang FM, Bai TQ, Hao XH (2018) Fruit trait diversity of mango(Mangifera indica L.)germplasm resources in Lancang River basin. J Southern Agric 49(2):214–221

    Google Scholar 

  • Xie JH, Liu CM, Ma WH, Lei XT (2005) Analysis of genetic relationship among mango germplasm by RAPD markers. J Fruit Sci 22(6):649–653

    CAS  Google Scholar 

  • Xiong M, Jin L (1999) Comparison of the power and accuracy of biallelic and microsatellite markers in population-based gene-mapping methods. Am J Hum Genet 64(2):629–640

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xu BY, Jin ZQ, Peng SQ, Xu SP, Zheng XQ (1998) RAPD Analysis of genomic DNA in mango cultivars in Hainan Island. Chine J Trop Crops 19(3):33–36

    Google Scholar 

  • Xu WT, Wu HX, Li L, Liang QZ, Luo C, Yao QS, Wang SB (2018) Genetic differences and cluster analysis of pollen quantity of 53 mango cultivars. Chin J Trop Agric 38(10):26–30

    Google Scholar 

  • Yamanaka N, Hasran M, Xu DH, Tsunematsu H, Idris S, Ban T (2006) Genetic relationship and diversity of four Mangifera species revealed through AFLP analysis. Genet Resour Crop Evol 53:949–954

    Article  CAS  Google Scholar 

  • Yamanaka S, Hosaka F, Matsumura M, Onoue-Makishi Y, Nashima K, Urasaki N, Yamamoto T (2019) Genetic diversity and relatedness of mango cultivars assessed by SSR markers. Breed Sci 69:332–344

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ying DS (2012) Construction of 78 mango germplasm fingerprinting. MSc Thesis, Hainan University, Haikou, China

    Google Scholar 

  • Yu K, Pauls KP (1992) Optimization of the PCR program for RAPD analysis. Nucleic Acids Res 20(10):2606

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zane L, Bargelloni L, Patarnello T (2002) Strategies for microsatellite isolation: a review. Mol Ecol 11(1):1–16

    Article  CAS  PubMed  Google Scholar 

  • Zhang CX, Ni ZG, Chen HR, Chen YF, Xie DH, Long YQ, Zhang FM (2014) Genetic diversity of mango (Mangifera indica L) in Nujiang Dry-hot valley revealed by morphological characters and AFLP marker. J Plant Genet Resour 15(4):753–758

    CAS  Google Scholar 

  • Zhang CX, Xie DH, Bai TQ, Luo XP, Zhang FM, Ni ZG, Chen YF (2020) Diversity of a large Collection of natural populations of mango (Mangifera indica Linn.) revealed by Agro-Morphological and quality traits. Diversity 12:27

    Google Scholar 

  • Zhang J, Xie W, Wang Y, Zhao X (2015) Potential of start codon targeted (SCoT) markers to estimate genetic diversity and relationships among chinese Elymus sibiricus accessions. Molecules 20(4):5987–6001

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhang Y, Huang G, Huang Q (2016) Analysis on genetic relationship of some mango (Mangifera indica L.) germplasms by SRAP markers and ISSR markers. SW China J Agric Sci 29(9):2045–2051

    Google Scholar 

  • Zhang ZS, Hu MC, Zhang J, Liu DJ, Zheng J, Zhang K, Wan Q (2009) Construction of a comprehensive PCR-based marker linkage map and QTL mapping for fiber quality traits in upland cotton (Gossypium hirsutum L.). Mol Breed 24(1):49–61

    Google Scholar 

  • Zhou L, Luo C, He TX, Yu HX, He XH (2019) Analysis of Genetic Diversity and Relationship of Mango Varieties based on EST-SSR Markers. Mol Plant Breed http://kns.cnki.net/kcms/detail/46.1068.S.20190513.1420.002.html

  • Zhou L, He XH, Yu HX, Chen MY, Fan Y, Zhang XJ, Fang ZB, Luo C (2020) Evaluation of the genetic diversity of mango (Mangifera indica L.) seedling germplasm resources and their potential parents with start codon targeted (SCoT) markers. Genet Resour Crop Evol 67:41–58

    Article  CAS  Google Scholar 

  • Zietkiewicz E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20(2):176–183

    Article  CAS  PubMed  Google Scholar 

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Authors and Affiliations

  1. State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, 100 Daxue Road, Nanning, 530004, People’s Republic of China

    Xin Hua He & Cong Luo

  2. Biotechnology and Nanotechnology Research Centre, MARDI Headquarters, 43400, Selangor, Malaysia

    Shahril Ab Razak

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  1. Xin Hua He
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  2. Shahril Ab Razak
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  3. Cong Luo
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Correspondence to Xin Hua He .

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  1. ICAR-National Institute for Plant Biotechnology, Raja Ramanna Fellow, Government of India, New Delhi, India

    Chittaranjan Kole

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He, X.H., Razak, S.A., Luo, C. (2021). Genetic Diversity Analysis of Mango. In: Kole, C. (eds) The Mango Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-030-47829-2_5

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