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Methods of Sperm DNA Extraction for Genetic and Epigenetic Studies

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Book cover Spermatogenesis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 927))

Abstract

High quality DNA extractions developed for mammalian somatic cells are ineffective for sperm, due mainly to the high degree of nuclear compaction in sperm. The highly specialized nuclear proteins in sperm create a chromatin structure that is at least six times denser than histone bound DNA. Unlike somatic cells, sperm DNA is highly compacted by the replacement of histones with sperm-specific low molecular weight proteins called protamines. Both the protamines and the disulfide bridges formed within and between protamines inhibit the extraction of sperm DNA by standard techniques used for somatic cells. Here we describe the guanidine thiocyanate method reported by Hossain with additional modifications resulting in high molecular weight DNA of high quality with an A260/280 ratio ranging between 1.8 and 2.0 and an A260/230 ratio of 2.0 and greater. The DNA is efficiently digested with restriction enzymes and amplified by PCR.

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References

  1. Shiurba R, Nandi S (1979) Isolation and characterization of germ line DNA from mouse sperm. Proc Natl Acad Sci U S A 76:3947–3951

    Article  PubMed  CAS  Google Scholar 

  2. Bahnak BR et al (1988) A simple and efficient method for isolating high molecular weight DNA from mammalian sperm. Nucleic Acids Res 16:1208

    Article  PubMed  CAS  Google Scholar 

  3. Hossain AM et al (1997) Modified guanidinium thiocyanate method for human sperm DNA isolation. Mol Hum Reprod 3(11):953–956

    Article  PubMed  CAS  Google Scholar 

  4. Hecht NB (1989) Mammalian protamines and their expression. In: Hnilica LS, Stein JL, Stein GS (eds) Histones and other basic nuclear proteins. CRC, Orlando, pp 347–373

    Google Scholar 

  5. Hecht NB (1990) Regulation of ‘haploid expressed genes’ in male germ cells. J Reprod Fertil 88:679–693

    Article  PubMed  CAS  Google Scholar 

  6. Oliva R, Dixon GH (1991) Vertebrate protamine genes and the histone-to-protamine replacement reaction. Prog Nucleic Acid Res Mol Biol 40:25–94

    Article  PubMed  CAS  Google Scholar 

  7. Dadoune JP (1995) The nuclear status of human sperm cells. Micron 26:323–345

    Article  PubMed  CAS  Google Scholar 

  8. Steger K (1999) Transcriptional and translational regulation of gene expression in haploid spermatids. Anat Embryol (Berl) 199:471–487

    Article  CAS  Google Scholar 

  9. Brewer L et al (2002) Condensation of DNA by spermatid basic nuclear proteins. J Biol Chem 277:38895–38900

    Article  PubMed  CAS  Google Scholar 

  10. Sambrook J, Russell D (2001) Preparation and analysis of eukaryotic genomic DNA. In: Molecular laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York, pp 6.3–6.64

    Google Scholar 

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Correspondence to Jeanine Griffin .

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Griffin, J. (2013). Methods of Sperm DNA Extraction for Genetic and Epigenetic Studies. In: Carrell, D., Aston, K. (eds) Spermatogenesis. Methods in Molecular Biology, vol 927. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-038-0_32

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  • DOI: https://doi.org/10.1007/978-1-62703-038-0_32

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-037-3

  • Online ISBN: 978-1-62703-038-0

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