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In situ Hybridization Histochemistry as a Tool for the Study of Brain Function

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Current Aspects of the Neurosciences

Abstract

In situ hybridization histochemistry has become a powerful tool for the study of specific peptide or protein biosynthesis at the level of the single neuron. Although this technique has also frequently been used to confirm immunoreactive neurons as the actual site of biosynthesis (e.g. Gee et al., 1983), the greatest utility is apparent in studies of altered gene expression in development or pathology, or due to physiological or pharmacological manipulations (Gee and Roberts, 1983). The goal of this chapter is to provide the reader with essential background information for understanding the technology of in situ hybridization histochemistry and then describe some of its applications, to help the reader to appreciate the potential utility of this technology for the analysis of brain function and its disorders.

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References

  • Allen, J. M., Sasek, C. A., Martin, J. B. and Heinrich, G. (1987). Use of complementary 125I-labelled RNA for single cell resolution by in situ hybridization. BioTechniques, 5, 774–779

    CAS  Google Scholar 

  • Angerer, L. M. and Angerer, R. C. (1981). Detection of poly A+ RNA in sea urchin eggs and embryos by quantitative in situ hybridization. Nucleic Acids Res., 9, 2819–2840

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Angerer, R. C., Cox, K. H. and Angerer L. M. (1985). In situ hybridization to cellular RNAs. In Genetic Engineering, Vol. 7 (ed J. K. Setlow and A. Hollaender ). Plenum Press, New York, pp. 43–65

    Google Scholar 

  • Angulo, J. A., Davis, L. G., Burkhart, B. A. and Cristoph, G. R. (1986). Reduction of striatal dopaminergic neurotransmission elevates striatal proenkephalin mRNA. Eur. J. Pharmacol., 130, 341–343

    Article  PubMed  CAS  Google Scholar 

  • Arai, H., Emson, P. C., Agrawal, S., Christodoulou, C. and Gait, M. J. (1988). In situ hybridization histochemistry: localization of vasopressin mRNA in rat brain using a biotinylated oligonucleotide probe. Molec. Brain Res., 4, 63–69

    Article  CAS  Google Scholar 

  • Arentzen, R., Baldino, F. Jr, Davis, L. G., Higgins, G. A., Lin, Y., Manning, R. W. and Wolfson, B. (1985a) In situ hybridization of putative somatostatin mRNA within hypothalamus of the rat using synthetic oligonucleotide probes. J. Cell Biochem., 27, 415–422

    PubMed  CAS  Google Scholar 

  • Arentzen, R., Manning, R. W., Wolfson, B., Davis, L. G., Higgins, G. A., Lin, Y. and Baldino, F. Jr (1985). Detection of neuropeptide mRNA in rat brain by in situ hybridization with radiolabelled synthetic oligonucleotide probes. Nucleosides Nucleotides, 4, 261

    Google Scholar 

  • Baldino, F. Jr, Chesselet, M.-F. and Lewis, M. E. (1989). High resolution in situ hybridization histochemistry. Meth. Enzymol., 168, 761–777

    Article  PubMed  CAS  Google Scholar 

  • Baldino, F. Jr and Davis, L. G. (1986). Glucocorticoid regulation of vasopressin messenger RNA. In In situ Hybridization in Brain (ed. G. R. Uhl ). Plenum Press, New York, pp. 97–116

    Chapter  Google Scholar 

  • Baldino, F. Jr, Deutch, A. Y., Roth, R. H. and Lewis, M. E. (1988a). In situ hybridization histochemistry of tyrosine hydroxylase mRNA in rat brain. Ann. N.Y. Acad. Sci., 537, 484–487

    Google Scholar 

  • Baldino, F. Jr, Fitzpatrick-McElligott, S., O’Kane, T. M. and Gozes, I. (1988b). Hormonal regulation of somatostatin messenger RNA. Synapse, 2, 317–325

    Article  PubMed  CAS  Google Scholar 

  • Baldino, F. Jr, and Lewis, M. E. (1989). Non-radioactive in situ hybridization histochemistry with digoxigenin-dUTP labeled oligonucleotides. Meth. Neurosci., 1, 282–292

    Article  Google Scholar 

  • Baldino, F. Jr, O’Kane, T. M., Fitzpatrick-McElligott, S. and Wolfson, B. (1988c). Coordinate hormonal and synaptic regulation of vasopressin messenger RNA. Science, N.Y., 241, 978–981

    Article  CAS  Google Scholar 

  • Baldino, F. Jr, Ruth, J. and Davis, L. G. (1989). Nonradioactive detection of vasopressin mRNA in rat brain by in situ hybridization histochemistry. Exp. Neurol., 104, 200–207

    Article  PubMed  CAS  Google Scholar 

  • Baldino, F. Jr, Wolfson, B., Arentzen, R., Manning, R. W., Reid, J. and Davis, L. G. (1985). Glucocorticoid sensitive stimulation of vasopressin mRNA synthesis in the paraventricular nucleus. Soc. Neurosci. Abstr., 11, 142

    Google Scholar 

  • Baskin, D. G., Davidson, D., Corp, E. S., Lewellen, T. and Graham, M. (1986). An inexpensive microcomputer digital imaging system for densitometry: quantitative autoradiography of insulin receptors with 1251 and LKB Ultrofilm. J. Neurosci. Methods, 16, 119–129

    Article  PubMed  CAS  Google Scholar 

  • Benno, R. H., Tucker, L. W., Joh, T. H. and Reis, D. J. (1982). Quantitative immunocytochemistry of tyrosine hydroxylase in rat brain. I. Development of a computer-assisted method using the peroxidase-antiperoxidase technique. Brain Res., 246, 225–236

    Article  PubMed  CAS  Google Scholar 

  • Bigeon, A. and Wolff, M. (1986). Quantitative histochemistry of acetylcholinesterase in rat and human brain postmortem. J. Neurosci. Methods, 16, 39–45

    Article  Google Scholar 

  • Binder, M., Tourmente, S., Roth, J., Renaud, M. and Gehring, W. J. (1986). In situ hybridization at the electron microscope level: Localization of transcripts on ultrathin sections of Lowicryl K4M-embedded tissue using biotinylated probes and protein A-gold complexes. J. Cell Biol., 102, 1646

    Article  PubMed  CAS  Google Scholar 

  • Bjorklund, A., Dunnett, S. B., Stenevi, U., Lewis, M. E. and Iversen, S. D. (1980). Reinnervation of the denervated neostriatum by substantia nigra transplants: functional consequences as revealed by pharmacological and sensorimotor testing. Brain Res., 199, 307–333

    Article  PubMed  CAS  Google Scholar 

  • Bjorklund, A., Lindvall, O., Isacson, O., Brundin, P., Wictorin, K., Streker, R. E., Clarke, D. J. and Dunnett, S. B. (1987). Mechanisms of action of intracerebral neuronal implants: studies on nigral and striatal grafts to the lesioned striatum. TINS, 10, 509–516

    Google Scholar 

  • Bjorklund, A. and Stenevi, U. (1979). Reconstruction of the nigrostriatal dopamine pathway by intracerebral nigral transplants. Brain Res., 177, 555–560

    Article  PubMed  CAS  Google Scholar 

  • Bloch, B., Popovici, T., Le Guellec, D., Normand, E., Chouham, S., Guitteny, A. F. and Bohlen P. (1986). In situ hybridization histochemistry for the analysis of gene expression in the endocrine and central nervous system tissues: A three year experience. J. Neurosci. Res., 16 183–200

    Article  PubMed  CAS  Google Scholar 

  • Bollum, F. J. (1974). Terminal deoxynucleotidyl transferase. In The Enzymes, Vol. 10 (ed. P. D. Boyer ). Academic Press, New York, pp. 145–171

    Google Scholar 

  • Burgunder, J.-M. and Young, W. S. III (1989). Ontogeny of cholecystokinin gene expression in the rat thalamus—a hybridization histochemical study. Dey. Brain Res., 46, 221–232

    Article  CAS  Google Scholar 

  • Card, J. P., Fitzpatrick-McElligott, S., Gozez, I. and Baldino, F. Jr (1988). Localization of vasopressin, vasoactive intestinal polypeptide, peptide histidine-isoleucine, and somatostatin mRNA in rat suprachiasmatic nucleus. Cell Tiss. Res., 252, 307

    Article  CAS  Google Scholar 

  • Cash, E. and Brahic, M. (1986). Quantitative in situ hybridization using initial velocity measurements. Anal. Biochem., 157, 236–240

    Article  PubMed  CAS  Google Scholar 

  • Chehab, F. F. and Kan, Y. W. (1989). Detection of specific DNA sequences by fluorescence amplification: a color complementation assay. Proc. Natl Acad. Sci. USA, 86, 9178–9182

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Chesselet, M.-F. and Affolter, H. U. (1987). Preprotachykinin messenger RNA detected by in situ hybridization in striatal neurons of the human brain. Brain Res., 410, 83–88

    Article  PubMed  CAS  Google Scholar 

  • Chesselet, M.-F. and Robbins, E. (1989). Characterization of striatal neurons expressing high levels of glutamic acid decarboxylase massenger RNA. Brain Res., 492, 237–244

    Article  PubMed  CAS  Google Scholar 

  • Chesselet, M.-F., Weiss, L., Wuenschell, C., Tobin, A. J. and Affolter, H. U. (1987). Comparative distribution of mRNAs for tachykinins in the basal ganglia: an in situ hybridization study in the rodent brain. J. Comp. Neurol., 262, 125–140

    Article  PubMed  CAS  Google Scholar 

  • Chronwall, B. M. (1985). Anatomy and physiology of the neuroendocrine arcuate nucleus. Peptides, 6 (Suppl. 2), 1–11

    Article  PubMed  CAS  Google Scholar 

  • Chronwall, B. M., Lewis, M. E., Schwaber, J. S. and O’Donohue, T. L. (1989). In situ hybridization combined with retrograde fluorescent tract tracing. In Neuroanatomical Tract Tracing Methods (eds L. Heimer and L. Zaborsky). Plenum Press, New York, pp. 265–297

    Chapter  Google Scholar 

  • Coghlan, J. P., Alfred, P., Haralambidis, J., Niall, H. D., Penschow, J. D. and Tregear, G. W. (1985). Hybridization histochemistry. Anal. Biochem., 149, 1–28

    Article  PubMed  CAS  Google Scholar 

  • Cohen, M. L., Golde, T. E., Usiak, M. F., Younkin, L. H. and Younkin, S. G. (1988). In situ hybridization of nucleus basalis neurons shows increased beta-amyloid mRNA in Alzheimer disease. Proc. Natl Acad. Sci. USA, 85, 12–27

    Google Scholar 

  • Collins, M. L. and Hunsacker, W. R. (1985). Improved hybridization assays employing tailed oligonucleotide probes: A direct comparison with 5’-end-labeled oligonucleotide probes and nick-translated plasmic probes. Anal. Biochem., 151, 211–224

    Article  PubMed  CAS  Google Scholar 

  • Cook, A. F., Vuocolo, E. and Brakel, C. L. (1988). Synthesis and hybridization of a series of biotinylated oligonucleotides. Nucl. Acids Res., 16, 40–77

    Article  Google Scholar 

  • Cox, K. H., DeLeon, D. V., Angerer, L. M. and Angerer, R. C. (1984). Detection of mRNAs in sea urchin embryos by in situ hybridization using asymmetric RNA probes. Dey. Biol., 101, 485–502

    Article  CAS  Google Scholar 

  • Davis, L. G., Arentzen, R., Reid, J., Manning, R. W., Wolfson, B., Lawrence, K. L. and Baldino, F. Jr (1986a). Glucocorticoid-sensitive vasopressin mRNA synthesis in the paraventricular nucleus of the rat. Proc. Natl Acad. Sci. USA, 83, 1145–1149

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Davis, L. G., Dibner, M. D. and Battey, J. F. (1986b). Basic Methods in Molecular Biology. Elsevier, New York

    Google Scholar 

  • Eng, L. F., Stocklin, E., Lee, Y.-L., Shiurba, R. A., Coria, F., Halks-Miller, M., Mozsgai, C., Fukayama, G. and Gibbs, M. (1986). Astrocyte culture on nitrocellulose membranes and plastic: Detection of cytoskeletal proteins and mRNAs by immunocytochemistry and in situ hybridization. J. Neurosci. Res., 16, 239

    Article  PubMed  CAS  Google Scholar 

  • Feinberg, A. P. and Vogelstein, B. (1983). A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem., 132, 6

    Article  PubMed  CAS  Google Scholar 

  • Feinberg, A. P. and Vogelstein, B. (1984). Addendum: A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem., 137, 266

    Article  PubMed  CAS  Google Scholar 

  • Fitzpatrick-McElligott, S., Card, J. P., Lewis, M. E. and Baldino, F. Jr (1988). Neuronal localization of prosomatostatin mRNA in rat brain with in situ hybridization histochemistry. J. Comp. Neurol., 273, 558–572

    Article  PubMed  CAS  Google Scholar 

  • Forster, A. C., McInnes, J. L., Skingle, J. C. and Symons, R. H. (1985). Non-radioactive hybridization probes prepared by the chemical labeling of DNA and RNA with a novel reagent, photobiotin. Nucl. Acids Res., 13, 745

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Freed, W. J., Perlow, M. J., Karoum, F., Seiger, A., Olson, L., Hoffer, B. J. and Wyatt, R. J. (1980). Restoration of dopaminergic function by grafting of fetal rat substantia nigra to the caudate nucleus: long-term behavioral, biochemical and histochemical studies. Ann. Neurol., 8, 510–519

    Article  PubMed  CAS  Google Scholar 

  • Fremeau, R. Y. Jr, Lundblad, J. R., Pritchett, D. B. Wilcox, J. N. and Roberts, J. L. (1986). Regulation of pro-opiomelanocortin gene transcription in individual cell nuclei. Science, N.Y., 234, 1265–1269

    Article  CAS  Google Scholar 

  • Fuller, P. J., Clements, J. A. and Funder, J. W. (1985). Localization of arginine vasopressin-neurophysin II messenger ribonucleic acid in the hypothalamus of control and Brattleboro rats by hybridization histochemistry with a synthetic pentadecamer oligonucleotide probe. Endocrinology, 116, 2366–2368

    Article  PubMed  CAS  Google Scholar 

  • Gall, C. M. (1988). Localization and seizure-induced alterations of opioid peptides and CCK in the hippocampus. NIDA Res. Monogr., 82, 12–32

    PubMed  CAS  Google Scholar 

  • Gee, C. E., Chen, C.-L. C., Roberts, J. L., Thompson, R. and Watson, S. J. (1983). Identification of proopiomelanocortin neurones in rat hypothalamus by in situ cDNA-mRNA hybridization. Nature, 306, 374–376

    Article  PubMed  CAS  Google Scholar 

  • Gee, C. E. and Roberts, J. L. (1983). In situ hybridization histochemistry: A technique for the study of gene expression in single cells, DNA, 2, 157–163

    Article  PubMed  CAS  Google Scholar 

  • Gehlert, D. R., Chronwall, B. M., Schafer, M. P. and O’Donohue, T. L. (1987). Localization of neuropeptide Y messenger ribonucleic acid in rat and mouse brain by in situ hybridization. Synapse, 1, 25–31

    Article  PubMed  CAS  Google Scholar 

  • Gillies, G. E., Linton, E. A. and Lowry, P. J. (1982). Corticotropin releasing activity of the new CRF is potentiated several times by vasopressin. Nature, 299, 355–357

    Article  PubMed  CAS  Google Scholar 

  • Goldman, D., Simmons, D., Swanson, L. W., Patrick, J. and Heinemann, S. (1986). Mapping of brain areas expressing RNA homologous to two different acetylcholine receptor alpha-subunit cDNAs. Proc. Nall Acad. Sci. USA, 83, 4076–4080

    Article  CAS  Google Scholar 

  • Gozes, I., Avidor, R., Biegon, A. and Baldino, F. Jr (1989). Lactation elevates vasoactive intestinal peptide messenger ribonucleic acid in rat suprachiasmatic nucleus. Endocrinology, 124, 181–186

    Article  PubMed  CAS  Google Scholar 

  • Griffin, W. S. T., Alejos, M., Nilaver, G. and Morrison, M. R. (1983). Brain protein and messenger RNA identification in the same cell. Brain Res. Bull., 10, 597–601

    Article  PubMed  CAS  Google Scholar 

  • Guitteny, A.-F., Fouque, B., Mougin, C., Teoule, R. and Bloch, B. (1988). Histological detection of messenger RNAs with biotinylated synthetic oligonucleotide probes. J. Histochem. Cytochem., 36, 563–571

    Article  PubMed  CAS  Google Scholar 

  • Han, V. K. M., Snowweart, J., Towle, A. C., Lund, P. K. and Lauder, J. M. (1987). Cellular localization of tryrosine hydroxylase mRNA and its regulation in the rat adrenal medulla and brain by in situ hybridization with an oligodeoxyribonucleotide probe. J. Neurosci. Res., 17, 11–18

    Article  PubMed  CAS  Google Scholar 

  • Harbarth, P. and Voseberg, H.-P. (1988). Enzymatic amplification of myosin heavy-chain mRNA sequences in vitro. DNA, 7, 297

    Article  PubMed  CAS  Google Scholar 

  • Harlan, R. E., Shivers, B. D., Romano, G. J., Howells, R. D. and Pfaff, D. W. (1987). Localization of preproenkephalin mRNA in rat brain and spinal cord by in situ hybridization. J. Comp. Neurol., 258, 159–184

    Article  PubMed  CAS  Google Scholar 

  • Hayashi, S., Gilham, I. C., Delaney, A. D. and Tener, G. M. (1978). Acetylation of chromosome squashes from Drosophila melanogaster decreases the background in autoradiographs from hybridization with 1251-labeled RNA. J. Histochem. Cytochem., 26, 677

    Article  PubMed  CAS  Google Scholar 

  • Herkenham, M. (1985). Levels of quantititative analysis of receptor autoradiography: Technical and theoretical issues. In Neuroscience Methods in Drug Abuse Research (NIDA Research Monograph 62, ed. R. M. Brown, D. P. Friedman and Y. Nimit ). U.S. Government Printing Office, Washington, D.C., pp. 13–29

    Google Scholar 

  • Hong, J. S., Yoshikawa, K., Kanamatsu, T. and Sabol, S. L. (1985). Modulation of striatal enkephalinergic neurons by antipsychotic drugs. Fed. Proc., 44, 2535–2539

    PubMed  CAS  Google Scholar 

  • Hsu, S.-M., Raine, L. and Fanger, H. (1981). Use of avidin-biotin-peroxidase complex (ABC) in immunoperoxidase techniques: A comparison between ABC and unlabeled antibody (PAP) procedures. J. Histochem. Cytochem., 29, 577

    Article  PubMed  CAS  Google Scholar 

  • Hu, N. T. and Messing, J. (1982). The making of strand-specific M13 probes. Gene, 17, 271

    Article  PubMed  CAS  Google Scholar 

  • Ingram, S. M., Krause, R. G. II, Baldino, F. Jr, Skeen, L. C. and Lewis, M. E. (1989). Neuronal localization of cholecystokinin mRNA in rodent brain with in situ hybridization histochemistry. J. Comp. Neurol., 287, 260–272

    Article  PubMed  CAS  Google Scholar 

  • Isseroff, A. and Lancet, D. (1985). An inexpensive microcomputer-based image analysis system: novel applications to quantitative autoradiography. J. Neurosci. Methods, 12, 265–275

    Article  PubMed  CAS  Google Scholar 

  • Jablonski, E., Moomaw, E. W., Tullis, R. H. and Ruth, J. L. (1986). Preparation of oligodeoxynucleotide-alkaline phosphatase conjugates and their use as hybridization probes. Nucl. Acids Res., 14, 6115

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Johnson, M. T. and Johnson, B. A. (1984). Efficient synthesis of high specific activity 35S-labelled human beta-globin pre-mRNA. Bio Techniques, 2, 156–162

    CAS  Google Scholar 

  • Jorgensen, M. B., Deckert, J., Wright, D. C. and Gehlert, D. R. (1989). Delayed c-fos proto-oncogene expression in the rat hippocampus induced by transient global cerebral ischemia: an in situ hybridization study. Brain Res., 484, 393–398

    Article  PubMed  CAS  Google Scholar 

  • Kelsey, J. E., Watson, S. J., Burke, S., Akil, H. and Roberts, J. L. (1986). Characterization of proopiomelanocortin mRNA detected by in situ hybridization. J. Neurosci., 6, 38–42

    PubMed  CAS  Google Scholar 

  • Khachaturian, H., Lewis, M. E., Hollt, V. and Watson, S. J. (1983). Telencephalic enkephalinergic systems in the rat brain. J. Neurosci., 3, 844–855

    PubMed  CAS  Google Scholar 

  • Kincaid, R. L. and Nightingale, M. S. (1988). A rapid nonradioactive procedure for plaque hybridization using biotinylated probes prepared by random primed labeling. Bio Techniques, 6, 44

    Google Scholar 

  • Kubota, Y., Inagaki, S., Kito, S., Takagi, H. and Smith, A. D. (1986). Ultrastructural evidence of dopaminergic input to enkephalinergic neurons in rat neostriatum. Brain Res., 367, 374–378

    Article  PubMed  CAS  Google Scholar 

  • Kuhar, M. J. and Unnerstall, J. R. (1985). Quantitative mapping by autoradiography: some current technical problems. Trends Neurosci., 8, 49–53

    Article  CAS  Google Scholar 

  • Lama, E., Kahn, A. and Guillouzo, A. (1987). Detection of mRNAs present at low concentration in rat liver by in situ hybridization: Application to the study of metabolic regulation and azo dye hepatocarcinogenesis. J. Histochem. Cytochem., 35, 559

    Article  Google Scholar 

  • Landegent, J. E., Jansen in de Wal, N., Baan, R. A., Hoeijmakers, J. H. L. and Van der Ploeg, M. (1984). 2-Acetylaminofluorene-modified probes for the indirect hybridocytochemical detection of specific nucleic acid sequences. Exp. Cell Res., 153, 61

    Google Scholar 

  • Landegent, J. E., Jansen in de Wal, N., van Ommen, G.-J. B., Baas, F., de Vijlder, J. M., van Duijn, P. and van der Ploeg, M. (1985). Chromosomal localization of a unique gene by non-autoradiography in situ hybridization. Nature 317 175

    Google Scholar 

  • Landegran, U., Kaiser, R., Caskey, C. T. and Hood, L. (1988). DNA diagnostics—molecular techniques and automation. Science, N.Y., 242, 229–237

    Article  Google Scholar 

  • Langer, P. R., Waldrop, A. A. and Ward, D. C. (1981). Enzymatic synthesis of biotin-labeled polynucleotides: Novel nucleic acid affinity probes. Proc. Natl Acad. Sci. USA, 78, 6633

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Lathe, R. (1985). Synthetic oligonucleotide probes deduced from amino acid sequence data. J. Molec. Biol., 183, 1–12

    Article  PubMed  CAS  Google Scholar 

  • Lewis, M. E., Arentzen, R. and Baldino, F. Jr. (1986a). Rapid, high resolution in situ hybridization histochemistry with radioiodinated synthetic oligonucleotides. J. Neurosci. Res., 16, 117–124

    Article  PubMed  CAS  Google Scholar 

  • Lewis, M. E., Krause, R. G. II, Burkhart, B. A., Angulo, J. A., Davis, L. G. and Christoph, G. R. (1992). Nigral grafts restore proenkephalin mRNA levels in the dopamine-depleted stiatum. Submitted

    Google Scholar 

  • Lewis, M. E., Krause, R. G. II and Roberts-Lewis, J. M. (1988). Recent developments in the use of synthetic oligonucleotides for in situ hybridization histochemistry. Synapse, 2, 308–316

    Article  PubMed  CAS  Google Scholar 

  • Lewis, M. E., Rogers, W. T., Krause, R. G. II and Schwaber, J. S. (1989). Quantitation and digital representation of in situ hybridization histochemistry. Meth. Enzymol., 168, 808–821

    Article  PubMed  CAS  Google Scholar 

  • Lewis, M. E., Sherman, T. G., Burke, S., Akil, H., Davis, L. G., Arentzen, R. and Watson, S. J. (1986b). Detection of proopiomelanocortin mRNA by in situ hybridization with an oligonucleotide probe. Proc. Nat! Acad. Sci. USA, 83, 5419–5423

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Lewis, M. E., Sherman, T. G. and Watson, S. J. (1985). In situ hybridization histochemistry with synthetic oligonucleotides: Strategies and methods. Peptides, 6 (Suppl. 2), 75–87

    PubMed  CAS  Google Scholar 

  • Liesi, P., Julien, J. P., Vilja, P., Grosveld, F. and Rechardt, L. (1986). Specific detection of neuronal cell bodies: in situ hybridization with a biotin-labeled neurofilament cDNA probe. J. Histochem. Cytochem., 34, 923–926

    Article  PubMed  CAS  Google Scholar 

  • Lightman, S. L. and Young, W. S. III (1989). Influence of steroids on the hypothalamic corticotropin-releasing factor and preproenkephalin mRNA responses to stress. Proc. Natl Acad. Sci. USA, 86, 4306–4310

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • McEachron, D. L. (1986). Computerized Image Processing for Functional Neuroanatomical Mapping. Society for Neuroscience, Washington, D.C.

    Google Scholar 

  • McEwen, B. S. and Pfaff, D. W. (1973). Chemical and physiological approaches to neuroendocrine mechanisms: Attempts at integration. In Frontiers in Neuroendocrinology (ed. F. Ganong and L. Martini ). Oxford University Press, New York

    Google Scholar 

  • McInnes, J. L., Dalton, S., Vize, P. D. and Robins, A. J. (1987). Non-radioactive photobiotin- labeled probes detect single copy genes and low abundance mRNA. Bio/Technology, 5, 269

    Article  CAS  Google Scholar 

  • Melton, D. A., Krieg, P. A., Rebagliati, M. R., Maniatis, T., Zinn, K and Green, M. R. (1984). Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter. Nucleic Acids Res., 12, 7035

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Miller, M. A., Zoeller, P. T. and Dorsa, D. M. (1988). Detection of vasopressin messenger RNA in cells within the bed nucleus of the stria terminalis by in situ hybridization histochemistry. Neurosci. Lett., 94, 264–268

    Article  PubMed  CAS  Google Scholar 

  • Milligan, J. F., Groebe, D. R., Witherell, G. W. and Uhlenbeck, O. C. (1987). Oligoribonucleotide synthesis using 17 RNA polymerase and synthetic DNA templates. Nucl. Acids Res., 15, 8783

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Monsma, F. J. Jr, McVittie, L. D., Gerfen, C. R., Mahan, L. C. and Sibley, D. R. (1989). Multiple D2 dopamine receptors produced by alternative RNA splicing. Nature, 342, 926–929

    Article  PubMed  CAS  Google Scholar 

  • Morrell, J. I. and Pfaff, D. W. (1982). Characterization of estrogen-concentrating hypothalamic neurons by their axonal projections. Science, N.Y., 217, 1273–1276

    Article  CAS  Google Scholar 

  • Morris, B. J., Haarmann, I., Kempter, B., Hollt, V. and Herz, A. (1986). Localization of prodynorphin mRNA in rat brain by in situ hybridization using a synthetic oligonucleotide probe. Neurosci. Lett., 69, 104–108

    Article  PubMed  CAS  Google Scholar 

  • Murasugi, A. and Wallace, R. B. (1984). Biotin labeled oligonucleotides: Enzymatic synthesis and use as hybridization probes. DNA, 3, 269

    Article  PubMed  CAS  Google Scholar 

  • Nojiri, H., Sato, M. and Urano, A. (1985). In situ hybridization of the vasopressin mRNA in the rat hypothalamus by use of a synthetic oligonucleotide probe. Neurosci. Lett., 58, 101–105

    PubMed  CAS  Google Scholar 

  • Palkovits, M., Leranth, C., Gores, T. and Young, W. S. III (1987) Corticotropin-releasing factor in the olivocerebellar tract of rats: Demonstration by light- and electron-microscopic immunohistochemistry and in situ hybridization histochemistry. Proc. Natl Acad. Sci. USA, 84, 3911–3915

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Perlow, M. J., Freed, W. J., Hoffer, B. J., Seiger, A., Olson, L. and Wyatt, R. J. (1979). Brain grafts reduce motor abnormalities produced by destruction of the nigrostriatal dopamine system. Science, N.Y., 204, 643–647

    Article  CAS  Google Scholar 

  • Reisfeld, A., Rothenberg, J. M., Bayer, E. A. and Wilchek, M. (1987). Nonradioactive hybridization probes prepared by the reaction of biotin hydrazide with DNA. Biochem. Biophys. Res. Commun., 142, 519

    Article  PubMed  CAS  Google Scholar 

  • Renz, M. and Kurz, C. (1984). A colorimetric method for DNA hybridization. Nucl. Acids Res., 12, 3435

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Rigas, B., Welcher, A. A., Ward, D. C. and Weisman, S. M. (1986). Rapid plasmid library screening using RecA-coated biotinylated probes. Proc. Natl Acad. Sci. USA, 83, 9591

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Rigby, P. W. J., Dieckmann, M., Rhodes, C. and Berg, P. (1977). Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J. Molec. Biol., 113, 237

    Article  PubMed  CAS  Google Scholar 

  • Roberts-Lewis, J. M., Cimino, M., Krause, R. G. II, Tyrrell, D. F. Jr, Davis, L. G., Weiss, B. and Lewis, M. E. (1990). Distribution of calmodulin mRNA in rat brain using cloned cDNA and synthetic oligonucleotide probes. Synapse, 5, 247–254

    Article  PubMed  CAS  Google Scholar 

  • Roberts-Lewis, J. M., Weiss, B. and Lewis, M. E. (1992). Chronic cocaine administration down-regulates proenkephalin mRNA in rat striatum. Submitted

    Google Scholar 

  • Rogers, W. T., Schwaber, J. S. and Lewis, M. E. (1987). Quantitation of cellular resolution in situ hybridization histochemistry in brain by image analysis. Neurosci. Lett., 82, 315–320

    Article  PubMed  CAS  Google Scholar 

  • Ruda, M. A., Iadarola, M. J., Cohen, L. V. and Young, W. S. III (1988). In situ hybridization histochemistry and immunocytochemistry reveal an increase in spinal dynorphin biosynthesis in a rat model of peripheral inflammation and hyperalgesia. Proc. Natl Acad. Sci. USA, 85, 622–626

    CAS  Google Scholar 

  • Ruth, J. L. (1984). Chemical synthesis of non-radioactively labeled DNA hybridization probes. DNA, 3, 123

    Google Scholar 

  • Sabot, S. L., Yoshikawa, K. and Hong, J.-S. (1983). Regulation of methionine-enkephalin precursor messenger RNA in rat striatum by haloperidol and lithium. Biochem. Biophys. Res. Commun., 113, 391–399

    Article  Google Scholar 

  • Saiki, R. K., Scharf, S., Faloona, F., Mullis, K. B., Horn, G. T., Erlich, H. A. and Arnheim, N. (1985). Enzymatic amplification of fl-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anaemia. Science, N.Y., 230, 1350

    Article  CAS  Google Scholar 

  • Sambrook, J., Fritsch, E. F. and Maniatis, T. (1989). Molecular Cloning, A Laboratory Manual, 2nd edn. Cold Spring Harbor Press, New York

    Google Scholar 

  • Savasta, M., Palacios, J. M. and Mengod, G. (1988). Regional localization of the mRNA coding for the neuropeptide cholecystokinin in the rat brain studied by in situ hybridization. Neurosci. Lett., 93, 132–138

    Article  PubMed  CAS  Google Scholar 

  • Schalling, M., Hockfelt, T., Wallace, B., Goldstein, M., Filer, D., Yamin, G., Schlesinger, D. H. and Mallet, J. (1986). Tyrosine 3-hydroxylase in rat brain and adrenal medulla: Hybridization histochemistry and immunohistochemistry combined with retrograde tracing. Proc. Natl Acad. Sci. USA, 83, 6208–6212

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Schwaber, J. S., Chronwall, B. M. and Lewis, M. E. (1989). In situ hybridization histochemistry combined with markers of neuronal connectivity. Methods Enzymol., 168, 778–791

    PubMed  CAS  Google Scholar 

  • Sherman, T. G., Akil, H. and Watson, S. J. (1985). Vasopressin mRNA expression: a northern and in situ hybridization analysis. In Vasopressin (ed. R. W. Schrier ). Raven Press, New York, pp. 475–483

    Google Scholar 

  • Sherman, T. G., McKelvy, J. F. and Watson, S. J. (1986) Vasopressin mRNA regulation in individual hypothalamic nuclei: a northern and in situ hybridization analysis. Neuroscience, 6, 1685–1694

    PubMed  CAS  Google Scholar 

  • Shivers, B. D., Harlan, R. E., Romano, G. J., Howells, R. D. and Pfaff, D. W. (1986). Cellular localization of proenkephalin mRNA in rat brain: Gene expression in the caudate-putamen and cerebellar cortex. Proc. Natl Acad. Sci. USA, 83, 6221–6225

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Shulman, D. I., Sweetland, M., Duckett, G. and Root, A. W. (1987). Effect of estrogen on the growth hormone (GH) secretory response to GH-releasing factor in the castrate adult female rat in vivo. Endocrinology, 120, 1047–1051

    Article  PubMed  CAS  Google Scholar 

  • Siegel, R. E. and Young, W. S. III (1985). Detection of preprocholecystokinin and preproenkephalin A mRNAs in rat brain by hybridization histochemistry using complementary RNA probes. Neuropeptides, 6, 573–580

    Article  PubMed  CAS  Google Scholar 

  • Singer, R. H., Lawrence, J. B. and Villnave, C. (1986). Optimization of in situ hybridization using isotopic and non-isotopic detection methods. Bio Techniques, 4, 230

    CAS  Google Scholar 

  • Singer, R. H. and Ward, D. C. (1982). Actin gene expression visualized in chicken muscle tissue culture by using in situ hybridization with a biotinated nucleotide analog. Proc. Natl Acad. Sci. USA, 79, 7331

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Sonnenberg, J. L., Rauscher, F. J. III, Morgan, J. I. and Curran, T. (1989). Regulation of proenkephalin by fos and jun. Science, N.Y., 246, 1622–1625

    Article  CAS  Google Scholar 

  • Springer, J. E., Robbins, E., Gwag, B. J., Lewis, M. E. and Baldino, F. Jr (1991). Non-radioactive detection of nerve growth factor receptor mRNA in rat brain using in situ hybridization histochemistry. J. Histochem. Cytochem., 39, 231–234

    Article  PubMed  CAS  Google Scholar 

  • Studencki, A. B. and Wallace, R. B. (1984). Allele-specific hybridization using oligonucleotide probes of very high specific activity: Discrimination of the human beta- and betas-globin genes. DNA, 3, 7–15

    Article  PubMed  CAS  Google Scholar 

  • Sudol, M. (1988). Expression of proto-oncogenes in neural tissues. Brain Res. Rev., 13, 391–403 Tang, F., Costa, E. and Schwartz, J. P. (1983). Increase of proenkephalin mRNA and enkephalin content of rat striatum after daily injection of haloperidol for up to 3 weeks. Proc. Natl Acad. Sci. USA, 80, 3841–3844

    Google Scholar 

  • Tchen, P., Fuchs, R. P. P., Sage, E. and Leng, M. (1984). Chemically modified nucleic acids as immunodetectable probes in hybridization experiments. Proc. Natl Acad. Sci. USA, 81, 3466

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Tecott, L. H., Barchas, J. D. and Eberwine, J. H. (1988). In situ transcription: Specific synthesis of complementary DNA in fixed tissue sections. Science, N.Y., 240, 1661

    CAS  Google Scholar 

  • Uhl, G. R., Zingg, H. H. and Habener, J. F. (1985). Vasopressin mRNA in situ hybridization: Localization and regulation studied with oligonucleotide cDNA probes in normal and Brattleboro rat hypothalamus. Proc. Natl Acad. Sci. USA, 82, 5555–5559

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Unger, E. R., Budgeon, L. R., Myerson, D. and Brigati, D. J. (1986). Viral diagnosis by in situ hybridization. Description of a rapid simplified colorimetric method. Am J. Surg. Pathol., 10, 1

    Article  PubMed  CAS  Google Scholar 

  • Unnerstall, J. R., Niehoff, D. L., Kuhar, M. J. and Palacios, J. M. (1981). Benzodiazepine receptors are coupled to a subpopulation of GABA receptors: Evidence from a quantitative autoradiographic study. J. Pharmacol. Exp. Ther., 218, 797–804

    PubMed  CAS  Google Scholar 

  • Urdea, M. S., Warner, B. D., Running, J. A., Stempien, M., Clyne, J. and Horn, T. (1988). A comparison of non-radioisotopic hybridization assay methods using fluorescent, chemiluminescent and enzyme labeled synthetic oligodeoxyribonucleotide probes. Nucl. Acids Res., 16, 4937

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Wada, E., Wada, K., Boulter, J., Deneris, E., Heinemann, S., Patrick, J. and Swanson, L. W. (1989). Distribution of alpha 2, alpha 3, alpha 4, and beta 2 neuronal nicotinic receptor subunit mRNAs in the central nervous system: a hybridization histochemical study in the rat. J. Comp. Neurol., 284, 314–335

    Article  PubMed  CAS  Google Scholar 

  • Walker, J. M. (Ed.) (1988). Methods in Molecular Biology, Vol 4: New Nucleic Acid Techniques. Humana Press, Clifton, N.J.

    Google Scholar 

  • Warden, M. K. and Young, W. S. III (1988). Distribution of cells containing mRNAs encoding substance P and neurokinin B in the rat central nervous system. J. Comp. Neurol., 272, 90–113

    Article  PubMed  CAS  Google Scholar 

  • Watson, S. J., Patel, P., Burke, S., Herman, J., Schafer, M. and Kwak, S. (1988). In situ hybridization of mRNA in nervous tissue: A primer. In In Situ Hybridization and Related Techniques to Study Cell-Specific gene expression in the Nervous System (ed. J. L. Roberts). Society for Neuroscience, Washington, D.C., p. 4

    Google Scholar 

  • Watson, S. J., Sherman, T. G., Kelsey, J. E., Burke, S. and Akil, H. (1987). Anatomical localization of mRNA: In situ hybridization of neuropeptide systems. In In situ Hybridization: Application to Neurobiology (eds K. Valentino, J. Eberwine and J. Barchas ). Oxford University Press, New York, pp. 126–146

    Google Scholar 

  • Werner, H., Koch, Y., Baldino, F. Jr and Gozes, I. (1988). Steroid regulation of somatostatin mRNA in the rat hypothalamus. J. Biol. Chem., 263, 7666–7671

    PubMed  CAS  Google Scholar 

  • Wilcox, J. N., Roberts, J. L., Chronwall, B. M., Bishop, J. F. and O’Donohue, T. L. (1986). Localization of proopiomelanocortin mRNA in functional subsets of neurons defined by their axonal projections. J. Neurosci. Res., 16, 89–96

    Article  PubMed  CAS  Google Scholar 

  • Wolfson, B., Manning, R. W., Davis, L. G., Arentzen, R. and Baldino, F. Jr (1985). Co-localization of corticotropin releasing factor and vasopressin mRNA in neurones after adrenalectomy. Nature, 315, 59–61

    Article  PubMed  CAS  Google Scholar 

  • Young. W. S. III (1989a). Levels of transcripts encoding a member of the protein kinase C family in the paraventricular and supraoptic nuclei are increased by hyperosmolarity. J. Neuroendocrinol., 1, 79–82

    Article  PubMed  CAS  Google Scholar 

  • Young, W. S. III (1989b). Simultaneous use of dioxigenin- and radiolabelled oligodeoxyribonucleotide probes for hybridization histochemistry. Neuropeptides, 13, 271–275

    Article  PubMed  CAS  Google Scholar 

  • Young, W. S. III (1990). In situ hybridization histochemistry. In Handbook of Chemical Neuroanatomy Vol. 8: Neuronal Microcircuits (eds A. Bjorklund and T. Hokfelt). Elsevier, New York

    Google Scholar 

  • Young, W. S. III, Bonner, T. I. and Brann, M. R. (1986a). Mesencephalic dopamine neurons regulate the expression of neuropeptide mRNAs in the rat forebrain. Proc. Natl Acad. Sci. USA, 83, 9827–9831

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Young W. S., Mezey, E. and Siegel, R. (1986b). Quantitative in situ hybridization histochemistry reveals increased levels of corticotropin-releasing factor mRNA after adrenalectomy in rats. Neurosci. Leu., 70, 198–203

    Article  CAS  Google Scholar 

  • Young, W. S. III, Mezey, E. and Siegel, R. E. (1986c). Vasopressin and oxytocin mRNAs in adrenalectomized and Brattleboro rats. Analysis by quantitative in situ hybridization histochemistry. Molec. Brain Res., 1, 231–241

    Article  CAS  Google Scholar 

  • Young, W. S. III, Shepard, E. A. and Burch, R. M. (1987). Plasma hyperosmolarity increases G protein and 3’,5’-cyclic adenosine monophosphate synthesis in the paraventricular and suraoptic nuclei. Molec. Endocrinol., 1, 884–888

    Article  CAS  Google Scholar 

  • Zischler, H., Nanda, I., Schafer, R., Schmid, M. and Epplen, J. T. (1989). Digoxigenated oligonucleotide probes specific for simple repeats in DNA fingerprinting and hybridization in situ. Hum. Genet., 82, 227–233

    Article  PubMed  CAS  Google Scholar 

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Baldino, F., Roberts-Lewis, J.M., Lewis, M.E. (1992). In situ Hybridization Histochemistry as a Tool for the Study of Brain Function. In: Osborne, N.N. (eds) Current Aspects of the Neurosciences. Palgrave, London. https://doi.org/10.1007/978-1-349-12275-2_1

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